Trichomycterus rosablanca: 134320364
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Entry
134320364 CDS
T09921
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03008
Ribosome biogenesis in eukaryotes
trn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
134320364 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
134320364 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134320364 (xrn2)
03019 Messenger RNA biogenesis [BR:
trn03019
]
134320364 (xrn2)
03009 Ribosome biogenesis [BR:
trn03009
]
134320364 (xrn2)
03016 Transfer RNA biogenesis [BR:
trn03016
]
134320364 (xrn2)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134320364 (xrn2)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
134320364 (xrn2)
Ribosome biogenesis [BR:
trn03009
]
Eukaryotic type
Pre-60S particles
RNases
134320364 (xrn2)
Transfer RNA biogenesis [BR:
trn03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
134320364 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
134320364
NCBI-ProteinID:
XP_062857792
LinkDB
All DBs
Position
9:5259906..5282063
Genome browser
AA seq
968 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCLEEKSKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLYNIIRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELTEEKKKMREEVFQRGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIVD
RLSNDPGWRNVTVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQIGHEIKDCQGVPREKKGEHDEFADSVPMSEQE
FIFIRLSVLREYLERELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTENGFVNLERVELIMQAVGVAEDNIFKKRKEDDENFKRRNKE
KKKRMKAGRGPAFMPGGQFAPRALGGYDRPMPVQNARQTAYDMRMQGNRYQQNRDAADSL
KAMLKNGGKGSEGQSDNVDSRGMKRKAEDSDSEPEPEDDVRLWESGWKQRYYKTKFDVDE
TDDEFRKQVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKDMFQEFEQGT
KPFKPLEQLMGVFPAASGNFLPLTWRELMSDPNSSIIDFYPEDFAIDLNGKKYAWQGVAL
LPFVDERRLRAALANVYPDLTSEEVRRNSLGSDVVFVGKSHPLCDFIHELYRSESHEGAE
IPPELCYGIQGALSLVEVPILPDQLVESPVPLLRDIPCSLAIGIKFRDPQYEENHVFKAV
VLPGAKTPAKVLKPGDWEKSNRQPWRPQLGFNPNRQQAHLDQSAFRTLGHHINHQQGGGQ
HGHGPPHNNPPMGGQYSNAPPPNVYHQGNYRPPLRDHQSDFSQSRQPGFQRGGAPYGYQQ
QYPRPQHGWDRAMQSQVSAYQHNMQRGRGGAGGYNQHPQRQDDRQPQEGYNSGRNYGLPP
PARRYNWN
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgggggttcctgcatttttccgctggctgagtcggaaatatccgtctattattgtgcac
tgtttggaggagaagtctaaagaatgcaatggtgttcggatacccgtcgacaccaccaaa
cccaacccgaatgaggtggagtttgacaacctttatttggacatgaacggaatcatccat
ccatgcacacatcctgaagacaagcctgcccccaaaaatgaagatgaaatgatggttgct
atttttgagtacattgatcggctctacaacatcattcgtccaagaagagttctgtacatg
gcgatcgatggtgtcgctcctcgtgccaaaatgaaccagcagagatccagaagattccga
gcctctaaagaaggggtggagctcactgaggagaagaagaagatgagggaggaggttttt
caaaggggtgggtacctgccacctgaagagataaaggaacggtttgacagtaactgcatc
actccaggcacagagtttatggacaacctggcgaaatgtttgcgatactacatcgtggac
agactgagcaatgatcccggctggcggaatgtcacagtttttctgtctgatgccagcgtc
cctggagaaggtgaacataagatcatggacttcatcagaagacagagagctcaaccaaac
catgaccccaatacacatcactgtctctgtggtgctgatgctgatctgatcatgttgggt
ctggccacacacgagccgaacttcaccatcatccgagaagagttcaagcccaacaaaccc
agaccgtgtgctctctgtggccaaataggtcatgaaattaaagactgtcagggagtgccc
agagagaagaaaggagagcatgatgaatttgcagactctgtgccaatgtctgagcaggag
ttcatatttattcgattgtctgtcctgcgagagtatctggagcgagagctgacgatggcc
agcctgccgtttccctttgactttgagaggagtgtggatgactgggtttttatgtgcttc
ttcgtgggaaatgatttcctgccccatctaccctctttagagatccgagagggagccatc
gaccggctagtgggcatttacaaagacgtcgttcacaaaactgggggctacctgactgag
aatggcttcgttaacctggagcgagtggagctcatcatgcaggctgtgggagtggctgag
gataatatcttcaagaaacgcaaagaggacgatgaaaattttaaaaggaggaacaaggaa
aagaagaaacggatgaaagccggacggggaccagcttttatgccaggaggtcagtttgct
cctcgagctctgggggggtatgaccgaccgatgcctgtgcagaacgctcgccagactgcc
tacgatatgaggatgcaaggaaaccgctaccagcagaaccgggatgcggctgattcctta
aaagccatgctgaaaaatgggggcaagggttcagaaggacagagcgataatgtggacagc
cgtggtatgaagaggaaagcagaggatagcgacagtgagcccgagcctgaggatgacgtc
aggttgtgggaatctggctggaagcagcgctactataaaaccaaattcgacgtcgatgag
acggatgatgaatttcgcaagcaagtggtgaagtcctacgtggagggactgtgctgggtt
ctcaggtactactaccagggctgtgcatcctggaagtggtacttcccatttcactatgca
ccctttgcatctgacttcaaagacatcaaggatatgttccaagagtttgaacaagggacc
aagccgtttaagccccttgagcagctgatgggagtgtttcctgccgccagtgggaacttt
ctgccactaacatggcgagaactgatgagtgaccctaattcctccatcatcgacttctat
cccgaagactttgccatcgatttaaatggaaagaaatatgcctggcagggtgttgcgttg
ttgccgtttgttgacgaacgcaggctgcgggcggccttggcaaacgtttacccggatcta
acttctgaagaagtcagacggaacagtctcggcagtgacgtggtcttcgtggggaagtcc
catcctctctgtgactttatccacgaactctatcggtcagaatctcacgagggtgctgag
attcctccagagctttgctatggaatccaaggtgcattatcgcttgttgaagtgcctatt
ctacctgatcaacttgtagaatctccggtcccattgttgcgggatatcccatgcagcctt
gcgattggaattaaattccgagatccacagtacgaggagaatcatgtgtttaaggcagtc
gttcttccaggagccaagactcccgctaaggtcttgaagccgggtgactgggagaaatcc
aacagacagccgtggagacctcagctgggtttcaaccccaaccgccagcaggcccacctg
gatcagtctgcgttcaggacactagggcatcatattaaccatcaacagggaggtgggcag
catggccatgggccacctcataacaacccacccatgggtgggcagtacagcaatgcccca
cctccaaacgtctatcaccaagggaactatcgtccgccccttcgagaccaccagagtgac
ttctcacagtccagacagcctggattccagagaggtggagcgccgtatggttatcagcag
cagtacccaaggcctcagcatggttgggatcgggccatgcagtctcaagtgtctgcgtat
cagcacaacatgcagagaggacgtggaggggcaggaggctataaccagcacccacaacgc
caagacgaccgccaaccacaggagggttataactccggaaggaattacggcctccctcca
ccagcgagacgctacaactggaattaa
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