Trichomycterus rosablanca: 134320515
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Entry
134320515 CDS
T09921
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn00100
Steroid biosynthesis
trn01100
Metabolic pathways
Module
trn_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
134320515 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
trn01006
]
134320515 (fdft1)
Enzymes [BR:
trn01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
134320515 (fdft1)
Prenyltransferases [BR:
trn01006
]
Terpene biosynthesis
Squalene/phytoene synthase
134320515 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
DUF7824
Motif
Other DBs
NCBI-GeneID:
134320515
NCBI-ProteinID:
XP_062857996
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All DBs
Position
9:complement(13898945..13919123)
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AA seq
456 aa
AA seq
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MAGVCCKSTAPFSMFKRSLSVRGSASSPRTAHIPTARRRGAHEGCVVLHRPLHFNNAVCV
HRHSAHLFFSSGQESMSESLRTCYVYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALD
TVEDDMTIPLERKVPLLHDFHTFLYQPDWCFTESKEKDRQVLEDFPSISVEFRNLGPEYQ
DVITDICHRMGVGMAEFLEKKVGSMQEWDKYCHYVAGLVGVGLSRLFSASQLEDPEVGRD
AELANSMGLFLQKTNIIRDYLEDQREGRVFWPEEAYSKFTSRLEDFCQPQHLSSALACLN
LLVTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSACYNNPQVFQGVVKIRKGQ
AVTLMMEATNMQAVKSIIAQYSQEILQKVSPSDPSRAETLQILDVIQEKTLSEATLPSRA
HPFSPVYFSAAMLLAALSWQYLNATQSPGTADMQGS
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagtttgttgcaaaagcacggcgcccttctccatgtttaagcgcagtttgtcg
gtgagaggttcggcctcgtctccgcgaaccgcgcacataccgaccgcgaggagaagaggc
gctcatgagggctgtgttgtgctccaccgtccgcttcattttaataacgctgtctgcgtt
caccgacactcagcgcatttgttcttctcttctggacaggaatccatgagcgagagtctg
aggacctgctacgtttatctgaaccaaaccagtagaagttttgcagcagtgattcaggcc
ctcgacggagaactgcgacatgcagtgtgtatattctatctggttctccgagctctggac
actgtggaagatgatatgacgattcctctggagaggaaggttccactactgcatgacttt
cacactttcctctaccaaccagactggtgcttcactgagagcaaagagaaagacagacaa
gttctagaagattttccctcgatttcagtcgagttcagaaacctgggcccggaatatcaa
gatgttattacggacatttgccatcgaatgggggtcggcatggcggaattccttgaaaag
aaagttggctcaatgcaggagtgggataagtactgtcactacgtggctggtctggtaggc
gtgggtctgtctcgcctcttctctgcatcacagctggaggatcccgaggtgggacgtgac
gctgagctagccaactccatgggtctcttcctacagaagacgaacatcatcagagactac
ttggaagaccagcgggagggacgcgtcttttggccagaggaggcatatagtaagtttacc
tctcgtctggaagacttttgccagccacaacacctgagctccgccctggcctgcctcaat
ctgctggtgaccgatgccctacgccatgttcctgatgtcattgcctacctgtcccgcctt
cgcaaccagagtgtcttcaacttctgtgccatcccacaggtgatggccatagcgacactt
tcagcctgctacaacaacccacaagtgttccagggggtggtgaaaatcaggaagggacag
gctgtgacgttaatgatggaagccaccaacatgcaagctgtgaagagcatcattgcacaa
tacagccaggagatcctccagaaagtctcgccgtctgatccatccagggctgaaacgctg
caaatcctggacgtgatccaggaaaagactctttccgaggcaacactgccctcgcgcgcc
catcccttctcaccggtgtatttttctgcagccatgcttttagctgctctcagctggcag
tatcttaatgccacacagtctccaggcaccgctgacatgcaggggagctga
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