Trichomycterus rosablanca: 134320679
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Entry
134320679 CDS
T09921
Symbol
hif1ab
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha b
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
trn
Trichomycterus rosablanca
Pathway
trn04137
Mitophagy - animal
trn04140
Autophagy - animal
trn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134320679 (hif1ab)
04137 Mitophagy - animal
134320679 (hif1ab)
04148 Efferocytosis
134320679 (hif1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134320679 (hif1ab)
Transcription factors [BR:
trn03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
134320679 (hif1ab)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
134320679
NCBI-ProteinID:
XP_062858272
LinkDB
All DBs
Position
9:complement(29799259..29815265)
Genome browser
AA seq
770 aa
AA seq
DB search
MDTGVVTEKKRVSSERRKEKSRDAARSRRGKESEVFYELAKELPLPHNVSSHLDKASIMR
LAISYLRMRKMLNSDEAKEESELESQLNSFYLKALEGFLMVLSEDGDMVYLSENVCKFMG
LTQFDLSGHSLYDFAHPCDHEEIREVLVHRIGCKKTKEQNTERSFFLRMKCTLTSRGRTV
NIKSSTWKVLHCTGHLRIQEHSKEPSITYLVLICEPIPHPSNIEVPLDSKTFLSRHTLDM
KFSYCDERITELMGHEPDDLLNRSVYEYYHALDSDHLTKTHHNLFAKGQATTGQYRMLAK
KGGYVWVETQATVIYSPKNSQPQCIVCVNYVLSGIVEEDVVLSLQQTVTESKTVEKEELE
IEQQDEEEKMEIDNGNLLKIEQVSCSAEGSMSLYDKLKDEPEALTVLAPAAGDTIISLDF
GCPDSEIHLAPLYNDVMLPSTSENISLPLSRLVSGEPSPALSKAEPEGEDFSFSSTPHST
PRSASTPAISTTDPSISEPSSPIDFCFQVDSDIGSEYKLDMVEKLFAIDTEPKTPFNTHE
MEDLDLEMLAPYIPMDDDFQLHTPSPLEPLTSGSHSVSDIKSLFQALPTPPPSTSSSVKS
EPSSRVPSPLHLLHEISSLPSSPFSGHQSLEASPARANSPQTNIPLSRMQVAECELSPKM
LAIQNAQRKRKLEFTQAVGLDALLQSVDGAVEPGKRAKVLEIKGSSLLGGNKTILILPSE
VASRLLCSSFETRGGLPELTRYDCEVNAPIQDRHSLLQGEELLRALDQVN
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggataccggtgttgtcaccgaaaagaaaagggtgagctcggagcgcagaaaggagaag
tcgagggatgcagctcgaagtcgcaggggcaaagagtctgaggtgttttatgagcttgca
aaagagctgcccctaccccacaatgtcagctctcacctggacaaggcatccatcatgagg
cttgccatcagctatttgcgcatgaggaaaatgctcaactctgatgaggcaaaagaagag
tcggagctggagagccagcttaacagcttttacctgaaggctctagagggtttcctgatg
gtgctgtctgaggatggagacatggtctatctgtctgaaaatgtctgcaaatttatgggc
cttacacagtttgatctgtctggtcacagcctttatgactttgcccatccctgtgaccat
gaggaaatcagagaggtgttggtgcacagaattgggtgcaagaaaaccaaggaacaaaac
acagaacgaagcttctttctgcgcatgaagtgcacacttactagcagaggacgtaccgtc
aacatcaagagttccacctggaaagttcttcattgcacaggacatttgcgcattcaggag
cacagtaaagagccctccattacatatttggtcctgatctgtgagcccattcctcacccc
tcaaacatagaggtgcctctggatagcaaaaccttccttagtcgccatactttagacatg
aagttctcatattgtgatgaaagaatcacagagctcatgggtcatgagccagatgaccta
ctaaacaggtctgtgtatgagtactaccatgccttggactctgaccacctcaccaagaca
catcataatttgtttgcaaaaggacaggctaccacaggccagtaccgaatgctggctaag
aagggaggctatgtttgggttgaaacccaggccactgttatttacagccctaagaactcc
cagccacagtgcattgtgtgtgtcaactacgttctcagtggcattgtggaagaagatgtg
gtcctctccttgcagcagacagtaactgagtcaaagactgtggaaaaagaggagctggag
atagaacagcaggatgaggaggagaagatggaaatagacaacggaaatctccttaagatc
gagcaggtgtcatgctctgcagagggctctatgagcttgtatgataagctgaaagatgag
ccagaggccctcactgtactggctcctgctgcaggagacaccatcatctcactggatttt
ggctgcccagattctgaaatacatctggctcctctgtacaatgatgtaatgctgccctct
accagtgagaacatttctctgcctctgtcccgcttggtctccggagagccctctccagct
ctgtcaaaagcagaacctgaaggagaggatttttcattttcatccacccctcacagcacc
ccaagatctgccagtactcctgccatctccaccactgaccccagcatttcagagccaagc
agcccaatagatttctgttttcaggtggattcagacattggctctgaatataaattggat
atggttgagaaattgtttgctattgacacagagcccaaaaccccatttaacacccatgaa
atggaggatcttgatctggagatgctagctccatatattccaatggatgatgactttcag
ctgcacaccccatcccctctggagccactcacttctgggtctcatagtgtgtcagacata
aaatccctcttccaggctttacccacccctccaccctcaacatccagctctgtaaagtca
gagccctcatcccgggtcccatctccccttcacctgttgcatgagataagcagccttcct
agctcaccattcagtggccatcaaagccttgaggcctccccagcccgtgccaacagcccc
cagacgaacatccctctcagcagaatgcaagtggcagagtgtgagctctctccgaagatg
ttagccatccagaatgcccagcgcaaaagaaaactggagtttacccaagctgttggactg
gatgctttgctgcaatctgtggatggtgctgttgagcctggaaaaagagccaaggtgctg
gaaatcaaaggctcaagtttgctaggaggaaacaagacaattcttatactgccatctgag
gtggcaagtcgtttgttgtgcagctcatttgagaccaggggagggttaccggagctaaca
cgatacgattgtgaggtcaatgctcctattcaggaccgtcactccctgctgcagggtgag
gagctgctgcgtgctctggaccaagttaactga
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