Trichomycterus rosablanca: 134320713
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Entry
134320713 CDS
T09921
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trn03041
]
134320713 (prpf39)
Spliceosome [BR:
trn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
134320713 (prpf39)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
NRDE-2
TPR_16
TPR_19
DUF7877
Motif
Other DBs
NCBI-GeneID:
134320713
NCBI-ProteinID:
XP_062858347
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All DBs
Position
9:33144314..33154761
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AA seq
740 aa
AA seq
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METSDLVLPDETMTGMVGADAPENGGATSMEMQASDSEWSVDPGQNQATTDQQISENGCL
KSTAEQKSSLSEENVMEQANNTTLFTENQLETNGHNSESSLKELEQPSGTDSTESPVNME
LEDAQKVENAAEAAPVPEEPVPSEFERLYKVVEDNPEDFNGWVYLLQHIEQENNLLTSRK
AFDAFFLHYPYCYGYWKKYADIEKKHGCIQVADEVYRRGLQAIPLSVDLWLHYITFLKEN
QDTSDGEAENRIRLAYEHAVLAAGTDFGSDRLWNAYITWETEQNNLANVTAVYDRILGIP
TQLYSQHFQRFKDHVQNNHPKHFLSEEEFVQLRLELAAANKPTGEGEEQTPDEELPPGTE
DLPDPAKRVTEIENMRHKVIETRQEIFNQNEHEVSKRWAFEEGIKRPYFHVKPLEKTQLT
NWREYLDFEIENGTPERVVVLFERCLIACALYEEFWLKYAKYLESYSIEGVRHVFKKACT
IHLPKKTIIHVLWAAFEEQQGSVEEARGILKALEEAVPGLAMVRLRRVSLERRHGNLAEA
EALLQDAIINAKNASESSFYSVKLARQFVKVQRSIEKAKKVLLEAIEKDQTCPKLYLNLL
ELEYSGDVQQNEAGILACFDQALNSSMPLELCVTFSQRKVEFLEDFGSDINTLVAAYDYH
QKLLKEQESTKRKAENGSEEPDSKRQRMDDGAAAAQMTPDMQAAQGYNYNNWYQQYNSWG
TQNTWGQYGQYNQYYPPPPT
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggaaacctctgatttggttctgccagatgagaccatgactggaatggttggtgcagat
gctcctgaaaacgggggtgccacatctatggaaatgcaagcctctgattcggagtggtca
gtggatccaggacaaaaccaggccactacggaccagcagatctcagaaaatgggtgttta
aaatcaacagcagagcaaaaatctagtctctctgaggagaatgtcatggaacaggccaat
aatactactttattcactgaaaatcagctagaaacgaatggacacaattcagaaagtagt
cttaaagagctagagcagccgagcggcactgacagcactgaaagccctgtaaatatggag
ctagaggatgctcaaaaagtggaaaatgcagctgaggctgccccggtgccagaagaacct
gttccctctgaatttgagagactctataaagtagtagaggacaaccctgaagactttaat
ggctgggtctacctcctgcagcatatcgaacaagagaacaacctattgacttctagaaag
gcatttgatgccttttttctacactatccatactgttatggctactggaagaaatatgca
gacatcgagaaaaaacatggttgcattcaagtagcagatgaggtctatcgtagaggtctg
caggccatcccgctaagtgtggacctttggctgcattacataaccttcttaaaggagaac
caagataccagtgatggagaagcagagaaccgcatacgcttggcatacgagcatgcagtc
cttgccgcgggtacagactttgggtcagatcgtctatggaatgcttatattacctgggaa
acggagcagaataacctggccaatgttactgcagtttatgaccgtattctgggtattcca
actcagctgtactctcagcactttcaaaggtttaaagatcatgtacaaaacaatcatcct
aagcacttcctatctgaagaggagtttgttcaactgcggttggagctggcagctgccaat
aagcccactggagagggagaggagcaaacccctgatgaggagcttccacccggcacagaa
gaccttcctgacccagccaagagagtcacagagattgagaacatgcggcataaggtgatt
gagacacggcaagagatatttaaccagaatgagcatgaagttagcaagcgttgggccttt
gaagaagggatcaaacggccatatttccatgtgaaacccttggagaagactcagctcact
aactggagggagtatctggattttgagattgagaacgggacacctgagcgtgttgtggtt
ctgtttgagcgctgcctgattgcctgtgccctttacgaggagttctggctaaagtatgca
aagtaccttgagagctacagcatcgaaggagtgagacatgtgttcaagaaagcatgcacc
atccatctacccaagaagaccatcatccatgttctctgggcagcgtttgaagagcaacaa
gggagcgttgaggaggctcgaggcatcctgaaggctttagaggaggcagttcctgggctg
gccatggtgcgactacggcgtgtaagcctagagcggcgtcacggaaacttggctgaagct
gaggctctgctgcaggatgccattattaatgcaaaaaacgccagcgaatcatctttttac
tctgtaaaactagccaggcaatttgtaaaagtccaaaggagtattgaaaaggctaaaaaa
gtactgctagaggccatcgagaaagatcagacttgtcccaagctgtacctgaaccttctg
gagctggagtacagtggagatgtgcagcagaatgaggcagggattctggcatgctttgac
caagcgcttaacagctcaatgcctttagagttgtgtgtcactttttctcagcggaaagtg
gaatttcttgaggactttggcagtgatataaacacgcttgtagctgcgtatgattatcat
cagaagcttctgaaagagcaagagtctacaaagagaaaagcagagaatggatctgaagaa
ccagattcaaagagacaacgcatggatgatggagcagcagcagcccaaatgacacctgac
atgcaggctgcccaaggatacaattataacaattggtatcagcagtacaattcctgggga
acacaaaacacctggggtcagtatggacagtataaccagtactaccccccaccccccaca
tga
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