Trichomycterus rosablanca: 134320767
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Entry
134320767 CDS
T09921
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
trn
Trichomycterus rosablanca
Pathway
trn04140
Autophagy - animal
trn04142
Lysosome biogenesis
trn04145
Phagocytosis
trn04148
Efferocytosis
trn05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
134320767 (vps18)
04142 Lysosome biogenesis
134320767 (vps18)
04140 Autophagy - animal
134320767 (vps18)
04148 Efferocytosis
134320767 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
134320767 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134320767 (vps18)
Membrane trafficking [BR:
trn04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
134320767 (vps18)
Hops complex
134320767 (vps18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-C3HC4_2
DUF2175
zf-RING_5
zf-RING_16
zf-RING_Vps41
zf_RING_Vps8
zf-ANAPC11
zf-RING_2
zf-RING_UBOX
zf-rbx1
LETM1_C
aq_1631
DUF5600
zf-C3H2C3
DUF1664
zf-RING_11
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
134320767
NCBI-ProteinID:
XP_062858436
LinkDB
All DBs
Position
9:complement(37828560..37843247)
Genome browser
AA seq
1038 aa
AA seq
DB search
MLVCFLLRLYNCSLSVCLSVYLFLSFSMVSSSFLERVYLPCDGLMVLLCALCPLVKTVSD
DTMATILDDYEDSQTIRHLQSRLPAANMIGITHSGFVNVRLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGKDTLLRIDLGKPDQPNQIELGRKDDSKVHKLFLDPTGSHLVISL
TTNECVYLNRNTQKVRNLSRWRGHLIESVAWNKQFGTETNTGPILVGTSQGVIFEAEISA
SEGSLFNTNPDQYFRQVHSLDEDGKPAPVCCLEVERGIESKYFVVATTRKRLFQFVSKLP
EGSEQQGFSAVFAQNQDLLPSFQEFPVNMGYSEIAFYTSKLRSSPKAFAWMMGNGVLYGQ
LDCVRPDSLLSDLQVWEYTPDVDFADNKPVSIVLTQFHFLLLMPDRVKAVCTLNGQVVHE
DVFPDKFGALKKMIKDPVGGLVWIYTERAVFRYHIQRESRDVWQMYMNMKKFELAKEYCK
DRPECRDTVLAKEAEHWFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLTKK
LENLKESERTQITLLVTWLTELYLNRLGRLEADDGKRPAFQQTRVDFRSFLCKAKFKECF
YNNRSTIYDLLASHGNVDDMVYFAVIMQDYERVISHHCQHDDYAAALELLSKHCDDKLFY
KFSPVLMQHIPKKVVDAWIQMGKRLDPKQLIPALVNYGQIGNTEQINQTVRYMEFCVYEL
AVTEEAIHNYLLSLYAKYKPDSLLWYLEQAGTHASEIHYDLKYALRLCAEHGYLQACVLV
YKIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICISLEEYNQHIEELKQEMEEATESAKRIRED
IQEMRNKYGVVESQEKCATCDFPLLNRPFYLFLCGHMFHYDCLFQEVTPHLSAYKQSKLD
ELQKKLAATTQTAKTRHRPKEEDTVSLGKGQGSREQLKSDIDDIVASECAYCGELMIKCI
NKPFIDPQKFEQEMSTWL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgcttgtttgttttctcttgcggctatataattgcagtctgtctgtctgtctgtctgtc
tatctatttctatctttctccatggtgtcttcttcattcttagaacgtgtgtatctgccc
tgcgatggactgatggtgttactgtgtgccttgtgcccactggttaaaacagtgagtgac
gacacaatggcgactatacttgacgattatgaagattctcagactatcagacacctgcag
agccgcctgcctgctgctaacatgatcggcatcactcactcgggcttcgtgaatgtgagg
ctggaggaagagaagcccatcttcaacaagcaacgcatcgatttctctccaccggagaag
ataaatcacttcgctgtttgcaacaaccagttatgcatgagtctggggaaggacactctg
ttaaggattgatctcgggaagccagatcagccgaaccagattgagttgggacggaaggac
gacagtaaagtacataaattgtttctggatccgacagggtctcacttggtgatcagtctg
accacaaacgagtgcgtctacttgaatcgaaacacccagaaggttcgaaatctctctcgc
tggaggggccacctgatcgaaagcgtggcctggaacaagcaattcggcaccgagacgaac
accggcccgattctggtgggtaccagccagggcgtcatcttcgaggcggagatctcggcg
tcggaggggagtctgttcaacaccaatccggaccagtacttcaggcaggttcactctctg
gacgaggacggcaagcccgcgcccgtgtgctgcctggaggtggagcgcgggatcgaatcc
aagtacttcgtcgtcgccacgactcggaagcggctcttccagttcgtgagcaagctcccc
gagggttcggagcagcagggcttcagcgccgtgttcgctcagaatcaggacctgttaccc
agctttcaggagttcccggtgaacatgggctacagcgagatcgcgttctacacgtccaag
ctgcgctccagccccaaagcgttcgcgtggatgatgggcaacggggttctgtacggccag
ctggattgcgtccgccccgactctcttctgagcgacctccaggtgtgggaatacacgccg
gacgtcgacttcgccgataacaagcccgtttccatcgtgctcacgcagttccacttcctg
ctcctgatgcccgatcgcgtcaaggccgtctgcacgctgaacggacaggtcgtccacgag
gacgtcttccccgataagttcggcgccctcaaaaagatgatcaaagaccccgtcggcggg
ctggtctggatctacaccgagagagccgtctttcgctaccacatccagagggaatccaga
gacgtctggcagatgtacatgaacatgaagaagttcgagctggccaaggaatactgcaag
gaccgacccgagtgcagggacacggttctggccaaggaggccgagcactggttccagaac
aaacgctacctggagagcgcaaagtgctacgctctgacgcagaactacttcgaagagatc
gcgctgaagttcatcgaggccaagcaagaagaagcgctgaaggaattcctcaccaagaag
ctggagaacctgaaagaaagcgagaggacgcaaatcacgctcctggtcacctggttaacc
gaactctacctgaaccggctcgggcggctcgaagcggacgacgggaagaggccggcgttt
cagcaaacccgggtcgatttccgctccttcctgtgcaaagccaagttcaaggagtgcttc
tacaacaaccgcagcaccatctacgacctcctggccagccacggaaacgtagacgacatg
gtctacttcgccgtcataatgcaggactacgagcgggtcatctctcaccactgccagcac
gacgactacgccgccgccctcgagctcctctccaagcactgcgacgacaagctcttctac
aagttctcgcccgtcctcatgcagcacatccccaagaaagtggtcgacgcctggatccag
atggggaagcgcctggaccccaagcagctcatcccggcgctggtgaactacggtcagatc
gggaacaccgagcagatcaaccagaccgtgcgctacatggagttctgcgtgtacgagctg
gcggtcacggaagaggccatccacaactacctgctgtcactctacgccaaatataagccg
gactctctgctgtggtatctcgagcaggcgggtacgcacgcctcggaaatccattacgac
ctgaagtacgcgctgcggctctgtgccgaacacggctatctccaagcgtgcgtcttggtt
tataagatcatggagctgtacgaggaagctgtggatttagccttacaggtcgacgtcgat
ctggccaagtcgtgcgccgatctcccggaggacgacgaggagctgaggaagaagctctgg
ctgaagatcgcccgccacgtggtccaggaggagaaggacgtgaagaaggccatgaactgc
ctgtccagctgtaacctgctgaagatcgaggacatcctgcccttcttccccgacttcgtc
accatcgaccacttcaaggaggccatctgcatctcgctggaggagtacaaccagcacatc
gaggagctgaagcaggagatggaggaggccacggagagcgccaagcgcatccgggaggac
atccaggagatgaggaacaaatacggcgtggtggagtcgcaggagaagtgcgccacctgc
gacttccccttactcaaccggcccttttacctcttcctgtgcggacacatgttccactac
gactgcctgttccaggaggtcacgcctcacctctcagcctacaagcaaagcaagctggac
gagcttcagaagaagctcgccgccaccacacagaccgccaaaacccggcacagacccaaa
gaggaggacacggtcagcctggggaagggccagggaagccgagagcagctcaaatccgat
atcgacgatatcgtcgcttccgaatgcgcttactgtggcgagctgatgatcaaatgcatc
aataagcctttcatcgatccacagaagttcgagcaggaaatgtccacctggctctga
DBGET
integrated database retrieval system
