Trichomycterus rosablanca: 134321189
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Entry
134321189 CDS
T09921
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
trn
Trichomycterus rosablanca
Pathway
trn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134321189 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134321189 (thoc5)
03041 Spliceosome [BR:
trn03041
]
134321189 (thoc5)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
134321189 (thoc5)
Spliceosome [BR:
trn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
134321189 (thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
BMF
Motif
Other DBs
NCBI-GeneID:
134321189
NCBI-ProteinID:
XP_062858868
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All DBs
Position
1:39886468..39896888
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AA seq
684 aa
AA seq
DB search
MSSDALKKRKPKVIRSEGGTPENKRSRGEGDQEVRTYNEEVELESRDPEQDYNLYKTTCE
ALANLMGEIHDLKASGAKEESPEVEARRREGCIHFITLKKLNRLSHMRLKKARDQTHEAK
QKVDVLHLQLQNLLYEVMHLQKEIGKCLEFKSQHEEIELVSVDEFFKEAPAEISRPDITK
DDSHQLTLARLDWELEQRKRLAEQYKSSLCTKEKILKGIELKKEYLSSLQPGLQAIMQAS
LPVQEYLSMPFERVQKQAEVARHLPPPLYVLFVQANAYGQACDKNLSVSISGDVDEAKDL
SRAPEDSQEDESDSDAEEEQQNTKRRRATVGVQLDDKRKEMLKQHPLSLCIDLKCKDGSV
LHLFFYYLMNLNILTVKTKVSASSDLSGAISAEELLNPESLLNCLYAADDGKETPNPTNR
YQFDKVGIITFADYVSELGHPYIWVQHLGGLQFSSDSPQTEGAVSSLSASHMENTMKLLR
GRLLSRLALHKQFSSLEHSIVPVSSECQHLFPAKVVSRLARWTMMSYEDFTELSFVQHVV
NAGLVRETDLFFMTILERGTARLQAAVVLNPRYPEITPLFSLSLLWKGERSSRTDDNLRA
MESEVNVFRSELQGPKPGLQLLTNQIQRLCMCLDVYLETESQVCDGSEGPREFPREKMCL
RAVRGPNRLKPFKYNYPQGFFSHR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgatgctctgaagaagcgcaagcccaaagtgatccgaagtgaaggtggcact
cctgagaataaacgctctcggggagaaggagaccaggaagtgcgaacatacaatgaagaa
gtcgaattggaaagcagagaccctgagcaggattataacctgtataaaaccacctgtgaa
gcactagctaatctaatgggtgaaatccatgatctcaaggccagtggagcgaaagaagaa
agtccagaggttgaggcaagacgcagagaaggctgtattcatttcattacactgaagaag
ctgaatcgtctttcacacatgagactaaagaaagcacgggatcagacacatgaggccaag
cagaaagtggacgtcttgcacctacaacttcagaatctgctctatgaagtcatgcatctt
caaaaagaaattggcaaatgccttgaattcaagtcccagcatgaggagattgaattggtt
agtgtggatgaatttttcaaggaggctccagctgaaatctctcgcccagacatcaccaaa
gacgattctcaccagctcacactcgctcggcttgactgggagctggagcagagaaagagg
ttggctgagcagtacaagagctctttgtgcactaaggaaaagattctaaaaggaatcgag
ttaaagaaagaatatctcagcagtctacagccaggccttcaggccatcatgcaggcatct
ctgcccgtgcaggagtatttgtccatgccgtttgagcgtgtgcagaaacaagctgaagtt
gcccgtcaccttccccctcctctatatgtgttatttgtgcaggccaatgcttatggacaa
gcatgtgacaagaatctgtctgtatctatcagtggggatgtggatgaagccaaagatctg
tccagagcacctgaggactcacaagaggacgagagtgattctgatgcagaggaagaacag
caaaatactaaaagacgacgagctacagttggcgtccagttagatgacaagcgtaaagag
atgctaaagcagcatccgctctcactgtgcatcgacctcaagtgtaaagatggcagtgta
ttgcatttgttcttctattacctaatgaacctcaacattcttactgtgaagactaaagtc
tctgcttcgtctgacctctcaggagctatcagtgctgaggagctgctgaacccagagtct
ctgttaaactgcctttatgcagctgacgatggcaaagaaacacccaatccaaccaaccgc
taccagtttgacaaagtgggcatcattacttttgctgattatgtttctgaacttggacat
ccatacatttgggtgcagcatcttggtggattgcagttttctagtgacagcccacagacg
gaaggggcagtcagctctctcagtgccagtcatatggagaacaccatgaagctgctacga
ggacggctgctgtcacgtctggcactacacaaacagtttagttcactagagcacagcatt
gtcccagtctccagcgagtgtcagcatctcttcccagcaaaagtggtttctcgtttagct
cgctggaccatgatgagctacgaggattttacggagctgagctttgtgcaacatgtggta
aatgctggcctggtgcgggagactgacctgttctttatgacaatactggaaaggggaaca
gctcgtctgcaggctgcagtggtgttgaatcctcgctatccagagatcactcctcttttc
tctctgtcacttctctggaaaggagagcgcagtagccggacggatgataacctgcgggca
atggagagcgaggtgaatgtgttcaggtctgagcttcaaggacctaaaccaggcctccag
ctcctgacaaatcagatccaacgtctgtgcatgtgcctggatgtttatctggagactgaa
agccaagtgtgtgatggttcagagggtccaagagagtttccaagggagaagatgtgcttg
cgtgctgtgaggggccctaatcgtctgaagccttttaagtacaactaccctcagggattt
ttcagccatcgctga
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