Trichomycterus rosablanca: 134321508
Help
Entry
134321508 CDS
T09921
Symbol
hps5
Name
(RefSeq) Hermansky-Pudlak syndrome 5 protein isoform X1
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134321508 (hps5)
Membrane trafficking [BR:
trn04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
134321508 (hps5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_HPS5
TPR_HPS5
WD40_WDHD1_1st
PEP5_VPS11_N
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_THOC3
Beta-prop_RIG_1st
Beta-prop_WDR36-Utp21_1st
Motif
Other DBs
NCBI-GeneID:
134321508
NCBI-ProteinID:
XP_062859368
LinkDB
All DBs
Position
1:complement(44003265..44029695)
Genome browser
AA seq
1141 aa
AA seq
DB search
MIPVVPEQFTHVLAEFDSLDPLLSALRLDSGRLKCTCLEVSRKWLALGTSAGGLHLIQRD
GWKQRLILTHKEGSLTQIACCPHDDDFIAVATSEGLVVVWELQLERRGRPERACVSWEHR
GQAITALCWDTVATRVFIGDAAGKVSFIRAGSSKLGKGSGFVIFPVQTITTVDSRVVQLG
YLEGRLLVSSLTRCYLCDTEREKFWRVGNKERDGEYGACFLPQQQAGSKGPGTATGSGHL
LYCARPGSRIWEANFNGEVLSTHQFKQLLAFPALPLISYKSEPQYNLAQKSPQSLAFPRL
LHLSDQNLLTWTDSAIYIFTPQNGQVLLWTRIKDIVDLAVFRNELFCLHGDGHLFHLSLL
PADRCVERLIKRESWTLATTVTCMFQHAIITSRARKSVSVDRLEHLKAQLNSTSQQELIG
QLDEIISKLEPLDSACSSRRSSISSHGSFNVLDCGIYRVISRRGSQSDEDTSSLVSQSML
EERMKEFNFAQEEEQGEHDTQSCAHVEEDKSDLLQFHLPLSFRPKPPRVALQAVKDSVSS
FVKKTTEKINNLQMNTDLWPRLDQKEGVQGDVTSSAILSSDEVDNEETEHVEKDLQELRA
ATEKAILQIQDPLVLLDPGSLSKVLLEWVPVLERVLCPEEHARGERESEVDRHDKKSLEI
QDEVTSTQSSSTPHQSDNVVNYQQESDPTLALVVGESPKDNKLSFTPLVTVPSPAIVAPV
EQPLPSDLQEDLCQLACLYLDIGCPGGAGDREVEKVCVFLLKFFYLLDKDRVRRMCMLRY
REQPDVLKAYIACMLEFTKASKVVEVIQKGDLLKSLRSLRELQSWNAPMLLAHLYRLYEK
HGEMAVRAYPQFYPTVLPSDIMAMVQPNHFLPYLDNLVQSQAEEQRLLFLGSLLQPETLR
QDWLELALSHDAPRKDDTITEEGHPKWHSHFFRWGYGRLLFLLIRLPADLHSKQKILESC
RNNGYWTGYLHLCKELQLREEAFTAICKLDDMSLLEEPNGIVPQTMEDWMFLIQLCRQQR
KIRSSLTSDDATCPTTSNGTDNDSCTANTNSEDDHARPSDLVNGSGDWSSHISVEKLALC
LARAIGPDKTIAALQECGLHSEHSAHFTLVCELLRVAEKRQRALIQTMLERCDRFLWSQQ
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgatcccggtggtgcctgaacagttcactcatgtcttggctgagtttgacagtttagac
cctttgctctcagccctgcgtctggactcaggcagactcaagtgcacttgccttgaagtg
tcaagaaagtggctggctcttggtacttcagcaggagggcttcacctcatccagagagac
ggatggaaacagagacttatcctcacccacaaggaaggctcccttacacaaatagcatgc
tgccctcatgatgacgacttcattgctgtagcaacaagtgaaggacttgtagtggtgtgg
gagctgcagctggagcgtcgtggacggcctgagcgggcatgtgtttcatgggagcaccgt
ggccaggccataacagctttgtgctgggacacagtagccacacgggtctttattggagac
gctgcaggaaaagtgtccttcatacgtgccggatcttccaaacttggcaagggttcgggg
tttgtgatctttccagttcaaaccataacaacagtggactctcgcgtggtacagttggga
tacttagagggccggctgctggtctcttctctcacccgctgctacctctgtgacactgaa
agggagaagttttggcgtgtaggcaataaggagcgggacggagagtatggagcttgtttt
ttaccccagcagcaagctgggtcaaaaggtccaggcacagccacaggaagtggccacctg
ctttactgtgctcgtccaggctcacgcatctgggaggccaactttaatggagaggttctt
agcacccatcagtttaaacagctgcttgcatttcctgccttacctctcatctcttacaag
agtgagccacagtacaacctagctcagaagagccctcagtccctcgcctttcctcgactg
cttcacctcagtgatcaaaacctcttaacatggacagactctgccatctatatctttaca
cctcagaatgggcaggtgttgctgtggaccaggatcaaagacattgttgacttggcggtg
ttccgcaacgagctgttttgtcttcatggtgatggacatctgtttcacctgtcgttgttg
cctgctgaccgctgtgtggagagacttataaagagagagagctggacactggctactact
gtcacttgcatgtttcagcatgcaataataacatccagggcaagaaagtctgtgtctgtt
gatcgcctagagcacctcaaagcccagcttaattccacctctcagcaggagcttattggc
cagctggacgaaattatcagcaagctggagccactagactcagcctgtagcagtcgcaga
agtagcatctcttctcatgggagcttcaatgtcctggattgtggaatctaccgtgtcatc
agccgtagaggcagccagtcagatgaggacaccagctcccttgttagccagtcaatgctg
gaggaaaggatgaaggagtttaactttgctcaggaggaggaacagggggagcatgacact
cagtcatgtgcacatgtagaggaggacaaatcagatcttctgcagtttcacctaccactg
tcattccgccccaaaccaccacgtgtcgccctgcaggctgtaaaagacagtgtttcaagc
tttgtaaagaagacaacagagaaaattaacaatctgcaaatgaacactgacctttggcct
cgacttgaccaaaaggaaggtgtacagggagacgttacaagctcagcaatcctatcttca
gatgaagtggacaatgaggagactgagcatgttgagaaggatctacaggaactgagggca
gcaacagagaaagccatcttacagatccaggatcctttagttctcttagacccaggaagt
ctaagcaaggtgcttttagagtgggttcctgtcttggagagggtcttgtgtccagaggag
catgccaggggagagagggagagtgaagttgacagacatgacaagaagagcttggaaata
caagatgaagtcacaagcacccagtcctcttccacaccccatcagtcggataatgttgta
aattatcagcaagaatcagatcctaccttagccctggtggtgggagagagccctaaagac
aataagctcagcttcacccctcttgtaacagtgccttcaccagccattgtagctccggtg
gaacagcctttgccctcagacctccaggaggacttgtgtcagcttgcctgtctttacttg
gacattggatgcccaggtggagcaggtgatagagaggtggagaaggtgtgtgtgtttttg
ctcaagttcttctacctgctggacaaggacagagtgaggaggatgtgcatgttgaggtac
agagagcagccagacgttctgaaagcctatatcgcttgcatgctagaatttaccaaggcc
agtaaggtggtggaagtcattcagaaaggagatttgctaaaatctttgcgcagtctgaga
gagctgcagtcctggaatgcgccaatgttgcttgcacacctatacagactatatgagaag
catggagagatggcagttcgtgcatatccacagttttatcctacagttctcccatctgac
atcatggccatggttcagcccaatcactttttgccatatctagacaatctggttcagtcc
caagctgaagaacaaagactcttattcttggggtcactccttcagcctgagactctacgc
caagattggttggagctggctcttagccatgatgcaccacggaaggatgatacaattaca
gaagaaggacacccaaaatggcactctcacttcttccgctggggctatgggcgtttgctg
tttttactgatccgcctgcctgctgacctacacagcaaacagaagatactggagtcatgc
agaaataatggctactggactggctacctgcacctgtgcaaggagctgcaactccgtgaa
gaggctttcacagccatctgcaaactggatgatatgagtctactggaggaacccaatggt
atagttccacagacaatggaggactggatgtttctgatccagctttgtagacaacaaaga
aagatcagaagttctttaacttctgacgatgccacctgtcccaccacaagtaatggcact
gacaacgatagctgcacagcaaacaccaacagtgaagacgaccatgccagaccaagtgac
ctggtgaacggttcaggagattggagcagccatatcagtgtggaaaagttagccttgtgc
ctggcacgggccatagggccggataaaaccatagcagcactgcaggagtgtgggctgcac
tcagaacatagtgcccatttcacactggtgtgtgagctgctaagagtggcagagaaaagg
caaagagctctgatccagactatgctggagcgatgtgatcggttcctctggtctcagcaa
gcataa
DBGET
integrated database retrieval system
