Trichomycterus rosablanca: 134321520
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Entry
134321520 CDS
T09921
Symbol
neo1b
Name
(RefSeq) neogenin
KO
K06766
neogenin
Organism
trn
Trichomycterus rosablanca
Pathway
trn04350
TGF-beta signaling pathway
trn04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
134321520 (neo1b)
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
134321520 (neo1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
trn04515
]
134321520 (neo1b)
Cell adhesion molecules [BR:
trn04515
]
Immunoglobulin superfamily
DCC/UNC5 family
134321520 (neo1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Neogenin_C
I-set
Ig_3
ig
Ig_2
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Fn3_VIN3
V-set
Interfer-bind
Tissue_fac
fn3_SORL1
Ig_Rha78A_N
fn3_2
DUF4998
Ig_4
NDNF
REJ
EphA2_TM
TM_ErbB1
WxLIP_PGBD
ASMase_C
SusE
Motif
Other DBs
NCBI-GeneID:
134321520
NCBI-ProteinID:
XP_062859422
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All DBs
Position
1:43796572..43917055
Genome browser
AA seq
1453 aa
AA seq
DB search
MAHLGGVVGPPRGSPLGGRQSLETPTVAGAAGDCSDLRKFTQLKFSVEPADVLAVQGLPA
VLNCSVVSDEPFRVEWKKDGTYLNLATGERRRLLPDGSLLISNVVHSAYNKPDEGVYQCV
ATIDNLGTIISRAARVTIPGLPHFSSHPESVSVHPGGNEVLICEVSADLASFTHWEKNGL
AVQADTRIVQLPSGALIISNASKADAGQYRCIIEGLGQAKTSQDVQVEVLTDSAAVERME
VLMDPSAVSKPVGEVVILPCVVKGFPLPVIRWIQNSKVIDESKERFAVIGGGSLQIINVT
EDDAGSYICQADNGNETLEIQAELTVQVPPKFLKKPSNIYAHEAMDIIFECNVVGSSSPT
VKWVKNGDAVIPSDYFKIVNEHDLQVLGLVKSDEGFYQCVAENEIGNTQASAQLIILDFD
VALPTSVVPSLTSATTDHVASGERSGSVPSPPRDLVASLVSTRFIRLTWRPPLEPHGENL
VYSVFYSLDGSSRERVENTTSPGEMQVTIENLIPDSKYTFRVTAANKNGLGESSTSLMVA
TQPEVQVSGPAPNLQAVSVTPTTVTLTWEKPLAGNGVIQFYKIYYTEKGKDSEQDIDVVG
LSYTMTGLKKFTEYSFRIVAYNKHGPGVSTDDLTIQTLSDVPSAAPQNVSLEVQNSKSIV
VQWEPPPPGTQNGYLTGYKIRYRKGGRKGEAAEIMTKELFYLVDGLERGTEYSFRLSAIT
VNGSGPGTEWITAETFKSDLDESQVPGVPSSLHVRPLVNSIVVSWTPPENQDIVVRGYII
GYGIGSPHAQTIKVDNKQRYYSIDNLDPSSHYVITLKAFNNMGEGIPVYESAITRPQSDP
IEPDIDLFELFHHTPHTPAPEPSPMLPPVGVQASVINHDAIKVSWADNSLPKNQKITDSR
YYTVRWKTNIPANTKFKVANTTTLTYTVTNLKPNTLYEFSVMVTKGRRSSTWSMTAHGTT
FETLPTSAPKDVTVVSKEDRPRTININWQPPSEANGKITGYIIYYSTDVNTQVHDWVVEP
VMGNRLTHQIQELTLDTIYYFKIQARNSKGMGPFSDTVQFRTPKAEPSDKMSSDQVGFQG
KPDGRSPLPDHGFGSSLDKPGMTGSQENHILLIVIIASVGVFTIVTVVVGAFLCTRRSNS
HQKKKRAVSKSSNSSHKYKSTSKDLKPPDLWIHHERLEMKAIDKSPEPNVVMTETPIPRA
SHEPSSSESAYQRQNTYCSLEVEESISTLTGRRGVRPKIMMPFESQPPQPVISAHPIHSL
DYLHHHHRHYHPPPRGYLHHQISLRAPAMPSPSSSYLDRHPSAESVRTQPSASETQVAVS
LSPSTADLQHTEVLIREEEAHCYKPPTAHVHPTQPMKSFTVPTVNVSTHSTPSSALPCTT
LMPAPGPGVKTAGIGTLSRVRAPMAVTVPSAPDQSETSKMLPHKETAYETDELSEEMAHL
EGLMKDLNAITTA
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atggcccacctgggtggagtagtcggaccacctcggggctctccactcggaggccgtcag
tcactcgagactcctactgttgcaggtgctgcaggagattgttcagacttgagaaagttc
acacagctgaagttctcggtggagccggcggatgtattggccgtacaaggtttacctgct
gtgctgaactgctcggtggtgagtgacgaaccgttcagggtggagtggaagaaggatggt
acgtacctgaacctggcgacaggcgagcgcaggcgtcttctcccggatggctcgctgctc
attagtaacgtggtgcactctgcttataacaagcctgacgagggagtctaccagtgtgtg
gccaccatcgacaacctgggcaccatcattagccgtgctgccagagtcaccatcccaggt
ctgcctcatttctccagccatccagagagcgtctctgtgcaccccgggggtaatgaggtc
ctgatctgtgaggtgagtgcagatctggcatccttcacccactgggagaagaacggtctg
gccgtgcaggcggacacccggattgtgcagctgcccagtggagccctgatcatcagcaat
gcctcgaaggctgatgccggccagtatcgatgcatcatagaaggactggggcaggccaag
accagccaggacgtccaagtagaagttttaacagattctgctgctgtagagagaatggaa
gtcttaatggacccatctgctgtgtctaagcctgtgggagaggttgtgatattaccgtgt
gttgtaaagggcttcccactcccggtcattcgctggattcagaacagcaaggttatagac
gagagtaaggagaggtttgctgtgattggaggaggaagtctacagattataaatgtaacc
gaggatgatgctggatcttacatctgccaggcagacaatggcaacgagaccctggagatc
caggcagagctcaccgtgcaagttccacctaagttcctcaagaaaccatcaaacatctac
gctcatgaagccatggacattatttttgagtgcaatgttgttggctcctcctcccctacg
gtgaagtgggtgaagaacggagatgcagtcattcccagcgactacttcaaaatagtgaat
gagcatgacttacaggtgctaggtctggtcaagtcagatgaaggtttttaccaatgtgtg
gctgaaaacgagattgggaacacccaggccagtgcccagctcatcatcctggactttgac
gttgccctccccacatctgttgtcccttcactgaccagtgccactactgaccatgtagcc
tccggtgagcgatcaggctcagtcccatcacccccacgcgatcttgtggcttcactcgtc
tccacccgattcatccggctcacctggaggcccccgctcgagccgcacggagagaacctc
gtctactctgtcttctatagcctggatggctccagcagagagcgtgttgagaacaccacg
tctccaggagagatgcaggtcaccatcgagaaccttatccctgattctaagtacactttc
agggtcacggcagccaacaaaaacggcctgggtgaaagctcaacgtctcttatggtggcc
acccagcctgaagtgcaggtatcaggtcctgcccccaatctgcaagcggtgtccgtcaca
cccaccacagtcactctgacctgggagaaaccactcgcaggcaatggggtgatccagttt
tataaaatctactacactgagaaaggaaaagactcagaacaggacatcgatgttgtagga
ttgtcctacacaatgacaggactgaagaaattcaccgaatacagttttagaattgtggct
tacaacaagcatggacctggggtctctacagatgatctgaccattcagaccctttctgat
gttccaagtgctgcgccacagaatgttagtcttgaagtccagaactccaaaagcattgtg
gtgcagtgggagccaccgcctcctggcacccagaatggatatttgacaggctataagatc
cgctacaggaagggtgggaggaaaggagaggcagctgagatcatgactaaagagctcttt
tatcttgtggatggcttggaacgaggaactgagtactcattccgcttgtcagccatcacg
gtgaatggcagtggtccgggaacagagtggatcacagctgagaccttcaaaagtgatttg
gatgaatcccaagtacctggagtacccagttcactgcatgtgcgtccgctggttaatagc
atcgtggtaagctggacccctccggagaaccaggacattgttgtgaggggctacatcatt
ggatacggcataggcagccctcatgcacagaccatcaaagtggacaacaaacaacgctac
tacagcattgataacctggacccaagttcacattatgtgatcactctaaaggccttcaac
aacatgggggagggaatacctgtgtatgagagtgccatcaccaggcctcaatcagatccc
atagagccagatattgatttatttgaactgtttcatcatactcctcacaccccagcaccc
gagccctcccccatgctccctcctgtgggcgtgcaggcttctgtcatcaaccatgatgcc
atcaaagtctcctgggctgataactccctgcccaagaaccagaaaatcactgactccaga
tattacactgttcgctggaagaccaacattcccgccaacaccaaattcaaggttgcaaac
actaccactttaacatacactgtgacgaacctgaagcccaacacactgtacgagttctca
gtcatggtgaccaagggtcggcgcagcagcacatggagtatgactgctcatggcaccacc
ttcgaaactcttcccacatctgctcctaaagacgtcactgtagtgagtaaggaggaccgt
ccacgcaccatcaacatcaactggcagccaccatccgaggccaacggtaaaatcacaggc
tacatcatttactacagtacagatgtgaatacacaggtgcatgactgggttgtagagccg
gtgatgggaaaccgactgacccaccagatccaggagctcaccctagacaccatctattac
tttaagattcaagcacgcaactcaaagggcatggggccgttttccgacacagtgcagttc
cgcactcccaaagctgagccctctgacaaaatgtccagtgatcaagtaggctttcagggg
aagccagacggacgttctcccttgcctgatcacggatttggatcctccctagataaacca
ggaatgacaggcagtcaggagaatcatatcctgctgatcgtcatcattgcttctgtggga
gtgtttactatcgtcacggtagttgtgggagcatttctctgcacacgccgctccaactcc
catcagaaaaagaagagagcggtttccaagtccagtaatagttctcataaatataaaagc
acctccaaagacttaaagcctccggacttgtggattcaccatgagcgtctggaaatgaag
gccatagacaaatcacctgagcccaacgtggtgatgacagagacgcccatcccccgtgct
tcacatgagccctccagcagtgagtctgcctaccaaagacagaacacatactgtagtctt
gaagttgaagaaagtatatctacactgacaggcagaaggggagtgaggcctaaaataatg
atgccctttgagtcacagcccccacaacctgttattagtgcccatcctatccattctctt
gactatcttcatcatcaccatcgtcactatcacccccctccacgtggttaccttcatcac
cagatcagcctgagggctcctgctatgccctctccatccagctcttatttagacaggcat
ccttctgcagaatcggtaaggactcagccctctgcctccgagacacaagtggctgtgtct
ctgagccccagcacagctgatctgcaacacacagaggtgctgatcagagaggaggaggca
cactgctataaaccccccacagctcacgttcaccccacacagcctatgaagagctttact
gtacccaccgttaatgtctcgactcacagcacacccagctctgccctgccctgcaccaca
ctgatgcccgcaccaggtcctggtgtaaagaccgcgggtattggcactttaagcagagtc
cgtgcacccatggctgttaccgtacccagtgctcctgatcagtcagaaaccagcaagatg
ctaccacataaagagactgcgtacgagacagatgagctgtcagaagaaatggcacatctg
gagggcttgatgaaagacctgaacgccatcacaacggcctga
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