Trichomycterus rosablanca: 134321521
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Entry
134321521 CDS
T09921
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03022
Basal transcription factors
trn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
134321521 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
134321521 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134321521 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134321521 (gtf2h1)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
134321521 (gtf2h1)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
134321521 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
MgtC_SapB_C
GeBP-like_C
PH_SLA1
Motif
Other DBs
NCBI-GeneID:
134321521
NCBI-ProteinID:
XP_062859385
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All DBs
Position
1:complement(44033866..44045429)
Genome browser
AA seq
546 aa
AA seq
DB search
MASLSEEVLLVVKRVRQKKQDGTLYLMTERIAWGPEGKDRFSVSHSYADIRCQKISPDGK
AKIQLQLVLHTGESTTFHFANESTAVKDRDAAKDLLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISADEFWANRLNMNSVDHSISNNSKQEVGISAAFLADIRPQTDG
CNGLRYNLTSDIIESIFRTYPAVKQKYAENVPHSMTEKEFWTRFFQSHYFHRDRINTGQQ
DIFSECAKQDEKGLKSLVVQGVKNPMVDLQSLEDKTLDEGYGSLTAPSTSNSNKTVKENS
NSAIIKRFNHHSAMVLAAGLRKVDALSDQASETDGNSRDSDCFQPPIKKVKLQEAIVFED
LENESGPKTIALNLKKSDRYSHGPVPLQSHHYSTSQDIINSINCIQEELSCYKPCLTQVM
SSSAASSAITALSPGGVLMQSGGQHTVSQLVPTDVQNELKHLYIAAGELLRHFWSCFPIN
TPFLEEKVVKMQSNLEKFQLTKLRPFQEKVQREYLGTNLTGHLEEMIQAAYNKLHAWQTR
RTIRKT
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcatccctgtcggaggaggtgcttctagtggtaaagagggttcggcagaaaaagcag
gatggtacactttatctgatgactgagcgcattgcctggggcccagaaggaaaggatcgc
ttcagtgtcagtcactcatatgccgacatccgttgtcagaagattagtcctgatggcaaa
gcaaaaattcagcttcagttggtactacacacaggagagagcaccaccttccactttgct
aatgaaagcacagctgtaaaggaccgagatgctgccaaggaccttttgcagcaactcctg
cccaagttcaaaaagaaagctaacaaagaactagaggagaaaaacaggatgctgcaggag
gatcctgtgctgttccagctttataaagacctggtagtaagtcaggttatcagtgcagat
gaattctgggctaatcggctgaacatgaactctgtagatcactccatttccaacaacagc
aagcaggaagtgggaatatcagcagctttcctggcagacatcagacctcagactgatggc
tgtaatggcctaagatacaacctgacctctgacatcattgaatcaatctttagaacatac
ccagcagtaaaacagaagtatgctgaaaatgtgcctcacagcatgaccgaaaaagagttc
tggacccgcttcttccagtcacattacttccacagagatcgcatcaacactggccagcag
gatatcttttctgagtgtgccaagcaggatgaaaagggtttaaagtccttggttgttcaa
ggtgtaaagaaccccatggtggacctgcaatccctggaggataaaacattagatgagggc
tatggctcgctaacagctccctctacatccaactccaataaaacagtaaaggagaacagc
aactctgccatcatcaaacgcttcaaccatcacagtgccatggtgctagcagcaggtcta
cgcaaagtggatgctctcagtgaccaggccagtgagactgatggaaattctagagactct
gactgcttccagcccccaataaaaaaggttaaattacaagaagctatagtgtttgaggac
ttggagaatgaatctgggcctaaaacaatagctttaaatcttaagaaatctgacaggtat
tcccatggtccagttcccttgcagtctcatcactactcaacaagtcaagacattattaac
tcaattaactgcatccaggaagaactgagctgctataaaccctgccttacacaggtcatg
tccagcagtgcagctagttcagccatcacagccctttcccctggaggagtattaatgcaa
tctggaggtcaacacactgttagtcagctggtacccacagatgttcaaaatgaactaaag
cacttatacatagcagcaggggagctgttacgacatttttggtcctgttttcccatcaac
acacccttcctggaggagaaggtggttaagatgcagtccaatctggaaaaattccagtta
actaagcttcgcccatttcaagaaaaggtccagcgagagtatctaggcaccaatcttact
ggtcatctggaagaaatgatccaggctgcctataacaagctgcatgcgtggcagacacgc
cgcacaataaggaaaacctga
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