Trichomycterus rosablanca: 134321827
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Entry
134321827 CDS
T09921
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
trn
Trichomycterus rosablanca
Pathway
trn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
134321827 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
trn03400
]
134321827 (msh2)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
134321827 (msh2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
134321827
NCBI-ProteinID:
XP_062859733
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Position
10:19112518..19130399
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AA seq
938 aa
AA seq
DB search
MAVQPKQNLSMDSVSETGFLNFYFSMPEKPDTTVRVFDRSDYYTVHGKDAVFAAKEVFKT
NTVIKMLGSGSKRLESVVLSKMNFESFVKDLLLVRQYRVEVYRNKTGSKSSKDHDWQITY
KASPGNLSQFEEILFGSGGGVGEGAAGVVGIRLGTGSDGQRVVGIGYVDSTLRQLGVCEF
PDNDHFSNLEALLVQIGPKECVLPGGDAAGDIGKIRQVVQRGGILLSDRKKAEFTTKDVV
QDLNRLLKARKGETVSSAALPEMEKQIAMSCLAAVIKYLELLSDESNFGSFKITTFDLGQ
YMRLDNAAVQALNLFQGSSDDHTGTHSLAGLLNKCRTPQGQRLVSQWIKQPLMDKNKIEE
RLNLVESFVEDSELRQCCQEDLLRRFPDLNRLAKKFHRQNANLQDCYRVYQAVDQLPSLV
QVLERHVGKHKVMLNAVFISPINDHISDFVKFQEMTETTLDMNQIEHHEFLVKPSFDPTL
SELRKTMDQLEKNMQAALNSAARELCMDPGKTVKLESNAQMGYFFRVTCKEEKALRNNKK
FTTLDVQKNGVRFTNSKLSSLNEEYTKNKEEYEEAQNAIVKEILSIAAGYVEPLQTLNDV
IAQMDAAVSFAVVSHAAPVPYVRPKILEKGTGRLILKGSRHPCVEAQDDVAFIPNDVILT
KGKEMFNIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAEISVVDSVLARVGAGDSQ
IKGVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFC
VFATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYRVKKGVCDQSFGIHVAEMANFPK
HVVASAQEKALELEEFQDISTVDEDAEPEVKRRCTEKKEGEKIIEDFLHKVKALPLDGMT
EEAFKAELHKLKVEVVAQNNRFVNEIVSRAENVKKALA
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcaacctaaacagaatttatctatggactctgtgtccgaaactggttttcta
aacttttatttctctatgccagagaaacccgacactacagtgagagtattcgatcgcagc
gattattacacagtacatggaaaagatgctgtttttgctgctaaagaagtgtttaagacc
aacacggttatcaaaatgctcgggtcaggcagcaaaaggctggagagtgtggtgctcagt
aagatgaactttgagtcatttgtgaaggacttgctgctggtccgacagtaccgtgtggag
gtgtatagaaataagactggaagcaagagtagcaaggatcatgactggcaaataacctac
aaggcttctccagggaacctgagccagtttgaagagattttgtttggcagtggtggaggc
gtaggagaaggagctgctggagtggtcgggatcagactaggaacaggaagcgatgggcag
cgtgttgtgggtattggatatgttgatagcactctcaggcagcttggtgtttgtgagttt
ccagataatgaccatttctccaatctggaggcacttttggtgcaaataggccccaaagag
tgcgtgcttcctggaggggatgctgccggggacattggaaaaattagacaggtggttcag
cgtggaggcattttgctttcagacaggaagaaggcagagtttacaaccaaagacgttgtt
caggatctgaatcgtctactgaaggctcgcaaaggagagacagtgtctagtgctgcactt
ccagagatggagaaacagattgccatgtcctgtttggcagctgtcattaaatacctggag
cttctttctgatgagtctaactttggttcctttaagataacaacatttgaccttggtcag
tacatgcgacttgataacgctgctgttcaggctcttaacctgtttcagggttcatccgat
gatcatacaggtacccattccctggcaggtcttttgaacaagtgccgaacacctcagggc
cagcgactggtcagtcagtggatcaaacagcctcttatggacaaaaacaagattgaggaa
aggttaaatctggtggagagttttgtggaggattcggagctgagacagtgctgccaggag
gacctccttcgacgttttcctgacctgaatcggctggctaaaaagttccatcggcagaat
gcaaacctgcaggactgttacagggtctaccaggctgtggaccagctgcccagcttagta
caggtcctagagagacatgttggaaaacataaggtcatgcttaatgcagtattcatttca
cccataaacgaccacatctcagacttcgttaagttccaggagatgactgaaactacactg
gacatgaatcagattgaacatcatgaatttctggtgaagccgtcattcgacccaacactg
agtgaactgaggaagaccatggaccagctggagaaaaatatgcaggctgccctgaacagt
gcagcccgtgagctttgtatggatccaggcaagacagtgaagctggagtccaatgcacag
atgggttattttttccgtgtcacctgcaaagaggaaaaggccttgcgcaacaataagaaa
ttcacaaccctggatgtgcagaaaaatggggtgcgcttcaccaatagcaagctgagttct
ttaaatgaagagtacaccaaaaataaagaagagtatgaggaagctcaaaatgccattgtg
aaagagatcctcagcatagctgctggttatgtggagccacttcagacactgaatgatgtg
atcgcgcagatggatgcagcggtaagctttgcagtcgtatcccatgcagcccctgtgccc
tatgtgagacctaaaatcctggagaagggcaccggcaggttgatcctgaagggttcacgc
catccttgtgtagaggcacaagatgatgtggccttcattcccaatgatgtgatcttaact
aaaggaaaggagatgttcaacatcattacagggccaaacatgggtggaaaatccacctac
atccgtcaggtgggtgtgattgtgcttatggcgcagatcggctgctttgttccttgtgat
gaagctgagatcagtgtggtggacagcgtgctggctcgcgtgggagcaggggatagccag
attaaaggagtgtccacctttatggctgagatgctagagacggctgctattttacgctct
gccactgaggactctctcattataattgatgaattgggcagaggaacttccacctatgac
ggttttggcttggcgtgggctatctctgagtatattgccacacgcctcaaatccttctgt
gtttttgccactcacttccatgagctgactgctttggcacagcaagtgccaacggtgcgc
aacctccatgttactgccctgaccacagacagcactcttactatgctttacagagtgaaa
aagggtgtgtgtgaccagagctttgggattcacgtggctgagatggcaaattttcctaaa
catgtagttgctagtgcacaggaaaaagctctggagctggaggagtttcaggatatctcc
acagtggatgaggatgctgagcctgaggtgaaaagacgctgcactgagaaaaaagaagga
gaaaagatcattgaggacttcctgcataaggtaaaggccctgcctcttgacggaatgaca
gaagaggctttcaaagcagaactgcacaaactgaaggtggaggtggtggcccaaaacaac
cgctttgttaatgagattgtttctcgtgctgaaaatgtgaaaaaggcgttggcatga
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