KEGG   Trichomycterus rosablanca: 134321898
Entry
134321898         CDS       T09921                                 
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
  KO
K03177  tRNA pseudouridine55 synthase [EC:5.4.99.25]
Organism
trn  Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:trn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:trn03016]
    134321898 (trub1)
Enzymes [BR:trn01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     134321898 (trub1)
Transfer RNA biogenesis [BR:trn03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    134321898 (trub1)
 Prokaryotic type
    134321898 (trub1)
SSDB
Motif
Pfam: TruB_N TruB_C_2 Pus10_C
Other DBs
NCBI-GeneID: 134321898
NCBI-ProteinID: XP_062859814
LinkDB
Position
10:26998595..27003539
AA seq 302 aa
MAENSMAAVNNVSLSKLQSLNGIFAIYKKHGPTSADVLNMLKQKLLKEAGVEKTNPKKRK
KQAFKLGHGGTLDSAASGVLVVGIGEGTKMLTSMLAGSKKYTTVGMLGKATDTLDATGTV
VEEKSYDHITREAFEEKLKQFTGEIMQVPPLYSALKKDGKRLSVLLKQGHEVEAKPARPV
TVYSISLQEFNPPQFTLEVECGGGFYVRSLVNDLGKALSSCAHVHELIRTKQGQFTLDEH
ALKEEHWTFQEISQRLQPCSKSSSVQNTSKKNKTQDSQLNRECSAEDHKAENAGEDHGHG
SN
NT seq 909 nt   +upstreamnt  +downstreamnt
atggcggagaacagcatggctgcagtaaacaacgtcagtttatctaagttacaatcttta
aacggtatctttgccatttataagaaacatggacccacttctgctgatgtgttaaatatg
cttaaacagaagcttttaaaagaggctggagtagagaagacaaacccaaaaaagaggaag
aaacaggctttcaaattgggtcatggcgggactctggacagtgctgcgtctggggttctg
gtagttgggattggtgaagggacgaaaatgctcacctccatgcttgctggatcaaagaaa
tacactacggttggaatgctgggaaaagctacagacacccttgatgccacgggaactgta
gttgaagaaaagagctatgatcacattacaagagaggcatttgaggagaagctgaagcag
ttcactggtgaaatcatgcaagtcccacctctgtactctgcactgaagaaagatgggaag
cgtctttcagttttgctgaagcaagggcatgaagtggaagctaagcctgcacgtccagtt
acagtttacagcatctcacttcaagaatttaatcccccacagttcactctggaggtggag
tgtggtggagggttttatgtcagaagcctggtgaatgacctaggaaaagcactgtcctca
tgcgctcacgtacacgagctgatccggactaagcagggtcagtttactctggacgagcac
gcgttaaaggaggagcactggacctttcaggaaatttctcagcgtctacagccctgttca
aagtcttcatctgtacaaaacaccagcaaaaaaaacaaaacacaggactctcagctcaac
cgtgaatgttctgctgaagaccacaaagctgagaatgctggtgaagatcatggtcacggc
agtaattag

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