Trichomycterus rosablanca: 134322778
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Entry
134322778 CDS
T09921
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
trn
Trichomycterus rosablanca
Pathway
trn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134322778 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134322778 (edc4)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134322778 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
134322778 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_EDC4L
EIF3I
Motif
Other DBs
NCBI-GeneID:
134322778
NCBI-ProteinID:
XP_062860187
LinkDB
All DBs
Position
11:26477156..26527015
Genome browser
AA seq
1386 aa
AA seq
DB search
MASNSSIDIEGATQHLRDILKLDRTSTSTESTTGESRRKTSSNGELNGLLGAGVIGTGVR
TAMVEPTPHKSDKTNLSDTQTICLTGDDGSTCIPITASNVEIIASRDSNIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNNYMIRVLRLGSSERTLLKGFTGAI
TDLAFAHLDSTLLGCVDEAGNMFIWQLTSQDSKIQDEIIVHIRRPEDTPLNSNRRLIWCP
FIPEDNEESPEEACQTLALLHEDRAEVWDIDILRSNNSTLPVDATELKEGFITIKGHTAR
ISEGALAPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWQPHNGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIKFSPDPVNSSIPPSLKASLDLSAEY
LILTDVQRKVIYVMELLQDQEKGRASFMAISEFLLTHPVLSFGVQDVSRARLRHTEVLPP
DEESESMTTEGSQGPLELKSGIQIKLYCVHTKSLQDVQIWFMPNQGATASLFVPSCSASQ
DGFGFADSLTDLGVDALSSDKDSGASGSQNDLCKIPSLPAPADFLSPADSTMPKLMTPDA
FMTPSASVPASPGSSASSLTIVTAMSSSDSGARAAEDLTQSPKLCADGAANSLSLTTSTS
SPRSNSILISGLGENIPVLPPLNPSSLSLDLQAMEPMLLLPQSSPTRARSPDVISSASTA
MSQDNIPEIASETLPRGLAEAHDSHQGLQDSMASAASALHLLSPLELGGGAAGDTEQRLS
STPSLLETALSHESAANAAAAAASCSDSGANRSWPAAPDITRETRNSLRDNGLGECSRDD
MKDMHMSSPFHRRNYHLTQNDSQDASAEQSDHDDEVASLASSSGNCGARSSHRLPVKDWK
TSPRGSPKLKRKSKKDDGDSSQHRQMENQLNTEVQEELLLLLRSQQRELAELRQNQQELL
QRLTGHMDAVQSSIMAHVEHVLLTQQEQEQTRMERVLAEGHARSQQLQEHMAQQLTHSLG
TILSSRLDKVLREEMKKMVPPTISKSLEPLTGQMSNTIAAKLTAVEATLKDNVTKVVKSK
NTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGTNEYIQQL
ETHVKNRKQHEQDARDPVIGQLQQMIDSLQASQDQLATTITASVRSEVQHQLHLIVGNLQ
DSILSQVQRIVKGEVSQAMKDQQAAVTSSIMQAMRSAASTPVPTSHLDYQTQQASILQLL
QQGQLNEAFQQALSASDLNLVLYVCETVNSQQVFGQHPCPLHQAVLLSLIQQLSTNLVTR
TELKISYLEDAVMNLDHGDPVTRDHMSAVLTQVRQKLFQFLQQDPHSSLGKRARRLLMML
QGLVNH
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaactccagtatagatatagaaggcgccacgcagcaccttcgagacatctta
aaactggatcgaacctccacttcgaccgagagcactacaggtgagagccgaagaaagacg
tcatccaatggagagctaaacgggctgttgggagctggcgtgattggaacaggagtacga
accgctatggttgaaccaacgcctcacaaatctgataaaaccaatttgtcagatacacag
acaatttgcctaactggtgatgatggctccacctgcatccccatcaccgctagtaatgtg
gaaattattgccagccgagactcaaatattgacagtaaagctcgtggaagcaacaaggtt
aaaatccagccagtggcaaagtacgactgggaacacaagtattactatggcaacttaata
gcagtgtctaatgcctatttggcgtatgccattagaggtgctaacaacaactatatgatt
cgagtgctccgactgggctcatcggagcgaacgctgttgaagggctttactggagccatc
acagacctggcttttgcccaccttgactccaccttgctgggctgtgtggatgaggccggc
aatatgtttatctggcagctcacaagccaagacagcaaaatacaagatgaaattattgtg
cacatccggaggcctgaagatacgccgctaaactccaaccgcaggcttatctggtgcccc
tttattcctgaggacaatgaggaaagcccagaggaggcctgtcagacactggcactgctg
cacgaggacagggctgaggtttgggacattgacatccttcgttctaataacagcacgttg
cccgtggatgccacagagcttaaagagggctttattaccattaaaggacacacagcgcgt
atcagcgagggggccttggctccagacggcactgtcttggccacagccagtcatgatggt
tatgtaaaattctggcagatctacatcgaaggacaggaccaacccagatgccttcatgag
tggcaaccacataatggcaggcctctttcctgcctcctcttctgtgacaaccacaagaag
caagatccagaagtgccattctggcgattcctgatcacaggagcagatcagaaccaggag
ctgaagatgtggtgcactgtatcatggacctgcctacagacaattaagtttagcccagac
ccggtaaactccagcatcccgccctctctgaaagccagtctggacctgtctgctgaatat
ctcatccttacagatgtgcaaaggaaggttatatatgtgatggagctgcttcaggatcag
gagaagggccgtgccagcttcatggcgatctctgagtttctgctcacccaccctgtgcta
agctttggcgtccaagatgtcagccgtgctcgtttgcgccacactgaagtccttcccccc
gacgaggagagtgaaagcatgaccacagagggaagccagggacctttggagttgaaatca
ggaatccaaatcaagctttactgtgtgcatacaaagtcccttcaggatgtgcagatctgg
ttcatgcccaaccagggtgcaactgcctccctctttgtaccatcatgttctgcttcccag
gatggctttggttttgcagactctctgacagatctaggcgtcgatgcactgagctcggac
aaggactctggggcaagtggctcacagaacgacctgtgcaagatccctagtcttccagct
cctgctgattttctgagccctgcagactcgacaatgcccaaactcatgaccccagatgcc
tttatgacacccagtgcatctgtaccagcctcgcctggcagcagtgctagcagcttgact
atagtgacggccatgagcagctcagacagcggtgcgagggctgcagaggacttgacgcag
agcccaaagctgtgtgcagatggagccgccaacagcctgtccctcactaccagcaccagc
agtcccagatcaaactccattctcatttcaggcctgggtgaaaacataccggtgctgccc
ccactgaacccctcctccctctcgctggaccttcaggccatggagccaatgctgctgctg
ccccagtcatccccaacaagagctcgatccccagatgtgatctcctcagcctccacagct
atgtctcaagacaatatccctgaaattgcctcagagacactgccaaggggcttggcagag
gcacatgactcacaccagggccttcaggacagcatggcatcagctgcctctgcactgcac
ctactttcaccactggagctaggtggaggagctgctggagacaccgagcagaggttaagc
agcacgccatctctactggagacagcactgtcgcatgaaagtgcagccaacgctgctgca
gctgcggcatcttgctcagacagtggtgccaaccgcagctggcctgcagcgcctgacatt
acgcgcgagaccagaaacagcctgagggataatggtctgggagaatgttctagagatgac
atgaaggacatgcacatgtcctcacccttccacagacgcaactaccaccttactcaaaac
gacagccaggatgccagtgcagagcaaagtgatcatgatgacgaagtggccagtctggca
tcatcctcaggaaactgtggtgctcgttcctctcacagactcccagtgaaagactggaag
acttcacctcgcggttcacccaaactcaagcgtaagagcaagaaagacgacggagattcc
tcccaacacagacagatggaaaaccagcttaataccgaggtgcaggaggaactgcttctg
ctgctaaggagccaacagagggagctggctgagctgcgacagaaccaacaagagctattg
cagaggctcacgggccacatggatgctgtgcagagctccattatggcccacgttgagcat
gtcctgcttacacagcaggaacaggaacagacaagaatggagcgggtgttagcagaggga
catgcacgtagccagcagcttcaggagcacatggcccagcagttgacccactctttgggc
actatactctccagtcggctggacaaagtgttacgggaggagatgaagaagatggttccc
ccaaccatctccaagtctctggaacccctgacaggacagatgagcaacacaatcgctgcc
aaattgactgcagtagaggcaacactaaaggacaatgtcaccaaagttgttaagtctaag
aatacaactgatgcgattggccgggcggcagctgaggccatgcagggtcctatccaggca
gcctacaaagatgctttccaaagcatcgtgctccctgtgtttgagcgaggctgccagtcc
atgttccagcagatcaacgacagctttaaacagggaaccaacgagtatattcagcagctg
gagacacatgttaagaacaggaagcagcatgaacaggatgcccgggaccctgtgattggt
cagctgcaacagatgattgactcattgcaggcttcccaagaccagctggccaccacaata
acagcaagtgtgcggtctgaggttcagcaccagctccacttgatcgtgggaaacttgcag
gattcaatcctgtcacaggtgcagcgcatagtaaagggtgaggtgagccaggccatgaag
gatcagcaggccgcagtcacctccagcatcatgcaggccatgcgctcggctgctagtaca
cctgtgcctaccagccaccttgactaccagacccagcaggccagcattctgcaattactg
cagcagggccaactcaatgaggcgttccagcaggccttgtctgcatctgatttaaatttg
gtgctgtatgtgtgcgagaccgtcaattcacagcaggtgttcggccagcatccgtgtccc
ctgcatcaggcggtcctgctgtctctcatccagcaactctcaaccaacttggttacacgc
accgaactcaagatcagctatctggaggatgcagtgatgaacctggaccatggtgaccca
gtcaccagggaccacatgagtgccgtgctgacacaagtacgtcagaagctgttccagttc
ctgcagcaggaccctcacagctccctgggcaagcgtgcacgccgcctcctgatgatgctg
cagggcctcgttaaccattaa
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