KEGG   Trichomycterus rosablanca: 134323619
Entry
134323619         CDS       T09921                                 
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
trn  Trichomycterus rosablanca
Pathway
trn03420  Nucleotide excision repair
trn04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:trn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    134323619 (ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    134323619 (ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:trn04121]
    134323619 (ddb1)
   03400 DNA repair and recombination proteins [BR:trn03400]
    134323619 (ddb1)
Ubiquitin system [BR:trn04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     134323619 (ddb1)
DNA repair and recombination proteins [BR:trn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      134323619 (ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      134323619 (ddb1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 134323619
NCBI-ProteinID: XP_062861263
LinkDB
Position
11:complement(13893649..13919442)
AA seq 1140 aa
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEIGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLKEKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAVAPPTIKQSTIVCHNRVDPNGSRYLLGDMDGRLFMLLLEKEELIDGTMVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFFCGNVAHQQLIQITSGSVRLVT
QESKSLISEWKEPQGRNISVAACNSTQVVLAVGRVLYYLQILGGELKQISTTEMEHEVAC
LDITPLGENGGESSLCAVGLWTDISARVLRLPSFSPLHKEMLGGEIIPRSILMTTFEGIH
YLLCALGDGALFYFGLDLQTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PKRICYQEVSQCFGVLSSRVEMQDVNGTTAPVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSLVSCKLGKDPAVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLMDLQNRLNKVIKSVGKIEHSFWRSFNTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcttataattacgtggtaacggcgcagaagcccacggcggtgaacgcatgcattacc
ggtcatttcacctcagcagaggacctgaaccttctcatagcgaagaacacacggctggag
atctatgtggtcactgcagagggattacgcccggtcaaagagatcggcatgtatggcaaa
atcgctgttatggagcttttcaggcctaaaggagaaagtaaggaccttctgtttattttg
acggccaagtacaatgcctgcattcttgagtataagcagaatggtgacagcattgatata
attactcgtgcccatggaaatgtacaggatcggattgggcgtccatcagagactggcata
atcggtatagtggatcctgagtgtcgtatgattgggctgaggctgtatgatggtctcttt
aaagttatcccattggatcgtgacaaccgtgaacttaaggcatttaatattcggctggaa
gagctgcaggttatagatgtgcactttctttatggatgccaagccccaacagtctgtttt
atataccaggaccctcaagggcggcatgtgaagacatatgaagtttctctgaaggaaaag
gaatttaataaaggaccctggaaacaggaaaatgttgaggccgaagcctcaatggttatt
ccagttcctgagccatttggtggtgctataatcattggtcaggagtccattacttatcac
aatggcgataaatatctggctgttgcacctccaacaatcaagcaaagcacaattgtttgt
cataaccgcgtggacccgaacggctctcgctatctgctgggtgacatggatggaaggctc
ttcatgctactgctggagaaagaggagcttatagatggaaccatggtcctcaaagaccta
cgtgtggaactactaggagagacttccattgctgagtgtcttacatacctggataatggt
gtggtctttgttgggtcaaggctgggagattctcaacttgtcaaactgaatgttgacagt
aatgatcagggatcatatgtagctgttatggaaacttttactaacctgggccccatagtg
gacatgtgtgtggtggatctggagcggcaaggccagggacagctggtgacttgctctggt
gcgtttaaagagggctctctaaggattattcgtaatggcattggaatccatgagcacgcc
agtattgacctgcctggcattaaaggactttggcctcttcgctcagaggcaggtagagaa
actgatgacatgctagtgctttcttttgttggccagaccagagtgctgatgctgagtggt
gaggaggtggaggagacggaacttccaggatttgtagataatcagcagacattcttttgt
ggaaatgtggctcaccagcaactaattcagatcacgtctggttcagttcgactggtcacc
caggagagtaagtctctgattagtgaatggaaggagcctcaaggacgaaacattagcgtg
gctgcctgtaactccacccaggtggtgctggctgtgggtcgagtgctttactatttgcag
atactcggtggagaactcaagcagataagtaccacagagatggagcatgaggtggcctgt
ttggacattacacctctgggagagaatggtggagagtccagtctgtgtgctgtaggcctg
tggacagacatctcagcccgcgttctccggctgcccagcttcagccccttacataaggag
atgctaggaggagagataattccacgttctatcctgatgactacttttgagggcatccat
tacctgctgtgtgctcttggagatggtgccctattctactttggcctcgacctgcagaca
ggtgttttaagtgagcggaagaaggtgactctgggcactcagcccacagtactgcgtact
ttccgctctctttccacctccaacgtgtttgcttgctcagacagacccactgtcatctac
tccagcaaccacaaactcgtcttctccaacgtcaacctcaaggaggttaattacatgtgc
cccctcaactctgagggctaccccgacagcttggctcttgcaaataacagcactctgacc
atcggcactattgacgagatccagaaactccatattcgcactgtacctctatacgagtcg
cccaagagaatctgttatcaggaggtgtctcagtgtttcggcgtgctgtcgagcagagtg
gagatgcaggatgtgaatggcaccacagctcctgtacgccccagtgccagcactcaggct
ctgtccagtagtgtcagttccagtaagctctttcccagtagcacttctccccatgagacc
tccttcggcgaggaggtggaggtgcacagtctgcttgtggttgaccagcacacttttgaa
gtgcttcacgcccaccagtttttaccaagtgagtacgcccttagcttggtttcctgtaaa
ctgggcaaagatcctgctgtgtacttcattgtgggcactgctatggtttaccctgaggag
gcagagcccaagcaaggtcgcattatcgtctttcactacacagatggtaaactgcagact
gtagcagaaaaggaggtgaaaggtgctgtgtactcaatggtggaatttaatggcaaatta
ctggccagcatcaacagcacagtgcgcctgtatgagtggacagcagagaaagagctgaga
acggagtgcaatcactataacaacatcatggcactctatctaaagaccaaaggcgacttt
atactagtgggagacttgatgagatcggtgctgctgctggcgtacaaacccatggagggc
aactttgaagagatcgctcgggattttaatcctaactggatgagtgcagtggagattttg
gatgatgataacttcctaggtgcagaaaatgcttttaacctttttgtttgccaaaaagac
agcgctgccaccactgatgaggagaggcagcatttgcaggaggtgggtgtgttccatctg
ggcgagtttgtgaatgtgttctgtcacggttccttggttctgcagaaccttggagagagt
tctactcccacccagggttcagtgctcttcggcacagttaatggaatgattgggctggtt
acttcactgtctgagggatggtatagtttactcatggacttgcagaacagactcaacaaa
gttattaagagcgtgggcaagatcgagcacagcttctggagatcattcaatacggaaagg
aagaccgagcaggccacaggattcattgatggagatctgatcgagagcttcttggatctt
ggccgggccaaaatgcaggaggttgttagcacactacagattgatgatggcagcggaatg
aagagagaagctacagtggatgaagtaattaagatagtggaggagctcaccaggatccac
taa

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