Trichomycterus rosablanca: 134323669
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Entry
134323669 CDS
T09921
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134323669 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134323669 (ddx6)
03036 Chromosome and associated proteins [BR:
trn03036
]
134323669 (ddx6)
Enzymes [BR:
trn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134323669 (ddx6)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
134323669 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
134323669 (ddx6)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Gene silencing
piRNA pathway
134323669 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
AAA_22
Motif
Other DBs
NCBI-GeneID:
134323669
NCBI-ProteinID:
XP_062861342
LinkDB
All DBs
Position
11:complement(20263754..20287535)
Genome browser
AA seq
483 aa
AA seq
DB search
MSTARTENPVILGLNPNGQMRGSVKPVGGPGGGGGGTQMTQPTQIKASSTINNGNSQPVT
TANTVIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQAVVIVPTRELALQV
SQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVGQV
QMIVLDEADKLLSQDFVQMMEEILSFLPKQRQILLYSATFPLSVQKFMTSYLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESSEE
VKL
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaacagaaaacccagttattctgggcttgaatccaaatggccaaatg
agaggctctgtgaagccagtaggtggacctggtgggggtggagggggcactcagatgacg
cagcccactcagattaaagcttccagcacaatcaacaacggaaactctcagcctgtgaca
acagcaaacacagtcattaaacctggggatgactggaagaagaatttaaagcttcccccg
aaggatatgcgcatgaaaacttctgatgtgacggctaccaagggaaatgaatttgaagat
tactgcctaaaacgagaactgttgatgggcattttcgagatgggatgggagaaaccatcg
cctatacaggaggagagcattcctattgctttgtctggaagggacattctggctagggca
aagaatggcacaggcaagagtggcgcctacctcattcccttacttgaacgtattgatcta
aagaaggatagcatacaagcggtggtcatcgttcccactagagaactggctctacaggta
agccagatctgcatccaggtcagcaaacacatgggtggagttaaggtcatggcaaccaca
ggtggaaccaacctccgtgatgacattatgaggcttgatgagacagtacatgttgtcatt
gctactcctggaaggattttggatctcatcaaaaaaggtgtggccaaagttggccaagtg
cagatgattgtattggacgaggcagacaaactcctgtctcaggactttgtgcagatgatg
gaggagattttgagctttttgcctaaacaaaggcaaattctgctgtattctgcaaccttc
ccactaagtgtacagaagtttatgacctcctatctgcagaagccttatgagataaacctc
atggaggagctaacactgaagggtgtgacccagtattacgcatatgtgacagaaaggcag
aaagttcattgccttaatactctcttttctagactccagatcaatcagtccataatcttc
tgtaactcatcccaacgagtggagctcctggccaaaaagatctcacagctgggttattct
tgtttctacattcatgccaagatgagacaggaacacaggaaccgcgtattccacgatttc
agaaatggcttgtgccgaaatcttgtctgcacagatttgttcacgagaggaattgacatt
caagctgtgaatgtggtcattaactttgattttcctaaactgggcgagacataccttcat
cgtattggcagatctggtcgttttgggcacttgggtttggccattaacttgatcacttat
gatgaccgctttaacttgaagggcattgaagagcagctgggaacagaaattaagcccatt
cccagcagcattgacaagagtttatatgtggcagagtatcacagtgaaagtagtgaggag
gtcaagctgtga
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