Trichomycterus rosablanca: 134323845
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Entry
134323845 CDS
T09921
Symbol
lmo7a
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
trn
Trichomycterus rosablanca
Pathway
trn04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
134323845 (lmo7a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
trn04121
]
134323845 (lmo7a)
Ubiquitin system [BR:
trn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
134323845 (lmo7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
PDZ_6
PDZ
LIM
PDZ_2
DUF6288
Motif
Other DBs
NCBI-GeneID:
134323845
NCBI-ProteinID:
XP_062861459
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All DBs
Position
12:10597284..10642728
Genome browser
AA seq
1581 aa
AA seq
DB search
MSEIKEYRRSLVVSPKASSQFNQFLPTKEKQSGYVPVPVHRTRPNRNSDNRRSWASPQFT
DEDGSFSSELGTQRSMSATHISWPSWYESSDSEADHPDPDLVLDDLASRRFHSSSVVTPT
NFALPMTSVKCTGMPQTTRPKGMVDSVPQATLTYLSDESRPPQKAAGRPESTDIHTYDDS
EEDDNEIGNADPVQDDFYARKLGMTGQPPATVHYDTFLPKFWTPEEDVHVKKIRLGSQRR
PWYREMQGFSQKKSDSFSVDSESDVVHQHHVFSRSQSEPPTSHPHTSETSTQSRLSSTPS
PSAQPLMLAQQNSEAPRFHLPDFWPRPDPTSGPRLIKCEKRPLLGRENANDPYNVPEDII
PDLENDDMFTRRTSAFHSCTDLARLKYGGLFSLHRKPESDIRVVTQPDHDQSVYPDIERD
DVISRRVQLQSTQRPLSGAPDIYHPVPIPEFSVLPTKLQAKVCTQCPPTCLDPQVLRKQK
GYDHVKSDDMLVRKLGMVHVQDGQSLTEVCQISVATQTGPSVPSFCSKEDQQKWEAIREA
SRVRYKKKLMVERLMQKKSESDRSSSISEIPIEAVASEVNFEELQKMRSRIRENEDKWQD
DLSKWKNRRRSVNSDIVKKKEEREQIEVLTGGSDTKKSKTFKEMEEERENREPGYRNRFS
FYSTSEDVFEEPTPKTRTINRSYTIDTPYTSMNRSLPSLIDEPDAGSLASVSKDSPASPI
QSNTGNTLNTNQKQTSTFSSHSLLDDPVPTSVTKKPSRPEPTRTSQLSSNSSMFSRPSLE
TNINSKPDNKSSSFVGPAPGTRNSYSRVEEDQKQTSLYRPDPSETKQPVVSRVSASLPRN
YQKTDSTRITSFVAPRPFGTQSTRVSSLPRPYMVDDKEQNGKTVSTRTSYSSSMHADKPS
FQTGSVQSSNGKQEENQAVSAARISSSITPIGRVSPQPKTQSYSDMRVSLNQKPNSSRDF
GFQSNWDSTGAHVKSIQPGSPAELCQLQVGDEIMAVNGNKVTDMNYNQWKKCMDEALQQG
SLLMDIRRHGKSNWDRDLPSLPFTSHKTINLTSPGPLGSPEPYVSTSLDFTSRSMDPTVK
TLNVSGSPVNSLTSFGINGGNLEQKVTLRNKESEPISMKNLKRRSEFFEQGGSETTSDVP
VQSPSVPSTRSPWDPEEERKRQEKWQKEQERQLREKYRRDQEKMEEEFKKAQQEAVKQGT
KQYEEDVKRLELQREASRLAAKEEEERRKREEEKKKMEQEEERRQLEQQKRLDERRYQES
YQRPQEYEVGSDYTNTFPELSYSHRLKSKSTPELDEMERTDIKGVYSRHRGLASWLLEEE
LRRKKNPQILRQQAASELELERRNILSAMRYRNPEKAGLGESKDKKEPITPTEVDRQQII
QDMKKKTSLLTDNSWIRQSASTNNQNKEPVNVPMRRGESLDNLDTKPSSWRSSWTPDSTS
TSIPDYSRPPRSSLSGSSYGSGNTVTTTLPASQLVRSNKPSSFPSPSSSTTGTLPENQSS
SKNRSVSGKKICTSCDMPLGKGAAMIIESLGLCFHLQCFKCIQCKCDLGGSENGAEVRIR
NKQLFCNSCYMRVKTAQPTAM
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaaatcaaagaatatcgtcgctcgctggtagtctctcccaaggccagcagtcag
ttcaaccagttcctgcccaccaaagaaaagcaatcaggctacgttcctgtaccggtgcac
aggacacgtcccaatcgcaacagtgacaacaggcgcagctgggccagtccgcagtttaca
gatgaggatggatccttctctagtgaactgggcacacaaaggtccatgtcagcgactcac
atttcctggccgtcttggtacgaaagcagcgattcggaagcagaccatccagatcctgat
ctggtcctggatgacctggctagccgcagatttcacagctcatctgtggtcacacccacc
aactttgcattaccaatgacctcagtgaaatgcactggaatgccccaaacaaccaggcca
aagggtatggttgatagtgtaccccaagcgacactgacttacctcagcgatgaatcacgg
cctcctcagaaggctgcagggaggcctgagtctactgacatccacacgtacgatgattca
gaggaagacgataacgagattggcaatgccgaccctgttcaagatgacttttatgctcgt
aaattgggaatgacaggccagccccctgccactgtgcactatgatacttttctgcccaag
ttctggacccctgaggaggacgtacatgtaaagaagatcagactgggttctcagcgtcgg
ccctggtacagagaaatgcaaggcttcagccagaagaagtcggactcattctcggtggac
tcagaatctgatgtcgttcaccagcaccatgttttctctcgctctcagtctgagccccct
acctcacacccacacacatctgagacttcaactcagtccagactttccagcactcccagt
ccttcagcacagccactcatgcttgctcaacaaaactctgaagccccaagatttcacctc
cccgatttttggcccagaccagaccccacctcaggccccaggcttattaagtgtgagaag
cgccccctattaggacgggagaacgctaatgatccctacaacgtacctgaagacattatt
cctgatttggaaaacgatgatatgtttaccagacggacatctgccttccactcttgcact
gatctggctagactaaaatatgggggcttgtttagcttgcatcggaagcccgagtctgac
atcagagtggttactcagccggatcatgaccaatctgtttaccctgacattgaaagagat
gacgtgattagccgcagggtacagcttcagtcaacacaacgtcccttatcaggcgcacca
gatatctatcaccctgtacctatccctgagttctctgtgctgcccacaaagcttcaggcc
aaagtgtgtacccaatgccccccaacttgcctggacccacaagtgctgaggaaacagaag
gggtatgatcatgtgaaaagtgatgacatgctggttagaaagcttggaatggtgcatgtt
caggatggacagagtcttacagaggtgtgtcagatctcagttgccactcagacaggaccc
agtgtgccttcattctgcagcaaagaggaccagcagaaatgggaggccattagagaggcc
agtcgtgtgagatataagaagaagctgatggtggagagactcatgcaaaagaaatcagaa
agcgataggagttcatcgataagtgaaattcccattgaggcagtcgcgagtgaggttaat
tttgaggagctgcagaagatgcgaagtagaataagggagaacgaggacaagtggcaggat
gatctcagtaaatggaagaacaggcgcaggagtgtgaactccgatatcgtgaagaaaaag
gaagagagggagcagattgaggtcctcactggaggtagcgacactaagaaatcaaaaacc
tttaaagagatggaggaggagagagaaaaccgagagcctggctacagaaaccgcttcagt
ttttactccacctctgaagatgtctttgaggaaccgacaccaaagaccaggacaataaac
cgcagctataccattgatactccatatacatctatgaaccgctctctgcccagcctgatt
gatgaaccagatgctggcagcctggcatcggtcagtaaagattctccagctagtcccatc
cagtccaacacaggaaacactctaaatacaaatcagaagcaaacaagtacatttagcagc
cacagcctcctggatgacccagttccaaccagtgtcaccaagaagcccagtcgtccagaa
cccaccagaacctctcagttaagtagcaacagcagcatgttcagcagaccttcactggag
actaacatcaactctaagccagataacaaatccagcagctttgttggacctgcacctgga
actagaaattcctacagtagagtggaggaggaccaaaagcagacttctttgtataggcct
gatccatcagagacaaagcaacctgtagtgtctcgggtttccgcctcccttcctagaaac
taccagaaaaccgatagcacacggatcacctcttttgttgcaccccggccttttggcacc
caaagcaccagggtctcttccctgcctcggccatatatggtggatgacaaggaacaaaat
ggtaaaacagttagcactaggaccagttattcatcatctatgcatgcggataagcctagc
tttcagactggctctgttcagagcagtaatgggaaacaagaagaaaaccaagcagtttca
gctgccaggatttcctcttctatcacaccaattggacgagtgtctccacagcccaaaact
caaagctacagtgacatgagggtgagcttgaatcagaaacccaacagcagtcgtgacttt
ggctttcagagtaactgggactccacgggcgctcatgttaaatctatacaaccaggcagt
ccagcagagctctgccaactacaagttggggatgagatcatggcagttaacgggaacaag
gtgacagatatgaattacaatcagtggaagaaatgcatggatgaggccctgcagcagggc
agccttctaatggatatccgcagacatgggaagagcaattgggacagagacctaccttcc
cttccatttacaagccataagacgatcaatctgacaagtccgggtcccctaggttcccct
gagccatatgtgagcacaagtttggattttacttcacgctctatggatcccactgtaaag
actctgaatgtcagcggctcacctgtcaatagtttgacctcctttggcattaatggtgga
aaccttgagcagaaagttactctgaggaacaaagaatcagaaccaatttctatgaaaaac
cttaaaaggagatctgagttttttgaacaaggtggttctgaaactacatccgatgtacct
gttcagtctccctctgtcccctccacccgctccccctgggacccggaggaagagcgcaag
cgacaggagaaatggcaaaaggagcaggagcgccagctacgagagaaatatcggcgagat
caggaaaaaatggaggaggagtttaaaaaagctcagcaagaagctgtaaagcagggcacc
aaacaatatgaagaggacgtgaagcgcctcgagcttcagcgggaggcctctagattggcc
gccaaagaggaggaggagagaagaaaaagggaagaagaaaagaaaaaaatggaacaggag
gaagagagaagacaactagaacagcagaaacgactagatgagaggaggtaccaggaatcc
taccagcgacctcaggaatatgaagtgggcagtgactataccaatactttccctgagcta
tcctactcacacagactaaagtccaaatccactccagagcttgatgaaatggaaagaaca
gacattaaaggtgtatatagcaggcaccggggcctggcgagctggcttctggaagaagag
ttaagaagaaagaaaaatcctcagatcctgagacagcaggctgcatccgaactggaacta
gagaggagaaacatccttagtgctatgagatacagaaatccagaaaaagctggtcttggt
gaaagtaaagataagaaggagccaataactccaactgaggtggaccggcagcagattatc
caggacatgaagaagaagacttcgttgctaacagacaacagttggattcgtcagtctgct
agtaccaacaaccaaaacaaagagcctgttaatgttcccatgaggagaggtgaatctttg
gacaacctagacacaaaaccttcatcctggaggtcatcatggacaccggacagcacttcc
acctccatcccagactacagtcgtccaccacgatcatctctttctggctcttcctatggt
agtggaaacacagtcactaccacccttcctgcttctcagcttgtaagatctaacaagccg
tcatcgttcccatccccgtccagctccacgactggcacgttgcctgagaatcagtcatcc
tcaaagaacaggtcagtcagtggcaagaaaatctgtacttcctgtgatatgccattgggc
aaaggagcagccatgatcatcgagtccttggggctctgtttccatttacaatgcttcaag
tgcattcagtgcaaatgtgatcttggcggctcagaaaatggagctgaagtcagaatccga
aacaaacagctcttctgtaactcctgctacatgcgagtcaaaactgcgcaacctactgcc
atgtga
DBGET
integrated database retrieval system
