Trichomycterus rosablanca: 134323885
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Entry
134323885 CDS
T09921
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134323885 (sox1a)
Transcription factors [BR:
trn03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
134323885 (sox1a)
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
134323885
NCBI-ProteinID:
XP_062861516
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Position
12:13459810..13461012
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AA seq
342 aa
AA seq
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MYSMMMETDLHSPGHQTNTNPGQTGPNSGSKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLSGGLLGGATTGAGVGLGMGAAGVGQRLESPGGHGGSAGYSHMNGWANGAYSGQVAAA
AAAAAMMQEAQLAYGQHPGSGAHHHHHHPHAHHHHPHNPQPMHRYDMSALQYSPISSSQS
YMSASPPGYGGISYPQHQNASVASSAAIGTLSSLVKSEPNVSPPVSTHPRGPCQGDLRDM
ISMYLPTGESGEPSVQSRLHALPQHYQSTTAGVNGTVPLTHI
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacttgcactccccgggacaccagaccaatacaaac
ccggggcagacaggtccaaactcgggaagcaaagccaaccaagagcgcgtcaaacgcccc
atgaacgcatttatggtttggtcccgcgggcagcggcgaaaaatggctcaggagaacccg
aaaatgcacaactctgaaatcagcaagaggctcggcgctgaatggaaggtgatgtcagaa
gctgaaaagcggccctttattgatgaggccaaaaggctgcgcgccatgcacatgaaagag
catccggattacaaataccggccaaggcgtaaaaccaagacgctgctcaaaaaggacaag
tactctctgtccggcgggctgctcggcggagcgaccacgggtgccggagtgggcctgggc
atgggcgcagcaggggtaggccagaggttggagagccccgggggtcatggaggatcagcc
gggtactcgcacatgaacggatgggcgaacggtgcgtattcgggtcaggttgctgcagct
gctgccgccgccgctatgatgcaggaggcacaacttgcttacgggcagcaccctggcagt
ggtgcacatcaccaccaccaccatccacatgcccatcaccaccatccacacaacccgcag
cccatgcaccgctacgacatgagcgcgctgcagtacagccccatttcgagctcgcagagc
tacatgagtgcttcaccgcccggctacggagggatttcctacccgcagcaccagaacgcc
agcgtggcctcgtcagccgcaatcggcacgctcagctctctcgtcaaatccgagccaaac
gtaagtcctccggttagcacgcaccccagaggcccgtgccagggagacttgagagacatg
attagtatgtacttaccgactggagaatctggagagccgtcagttcagagcagactgcac
gctttaccgcagcactatcagagcacgacggccggagtaaacgggactgtcccgctaacg
cacatctga
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