Trichomycterus rosablanca: 134324092
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Entry
134324092 CDS
T09921
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
trn03037
]
134324092 (ift88)
Cilium and associated proteins [BR:
trn03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
134324092 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_19
TPR_6
TPR_14
TPR_7
TPR_16
TPR_11
ANAPC3
TPR_17
TPR_9
ARM_TT21_5th
TPR_CcmH_CycH
TPR_10
TPR-S
TPR_15
ARM_TT21_C
ARM_TT21_4th
TPR_MalT
DUF2989
Coatomer_E
ARM_TT21_2nd
DUF6584
TPR_Slam
HAT_PRP39_C
SHPRH_helical-1st
DUF5588
DUF2225
MIT
RNPP_C
DUF2526
Motif
Other DBs
NCBI-GeneID:
134324092
NCBI-ProteinID:
XP_062861812
LinkDB
All DBs
Position
12:complement(13180437..13197077)
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AA seq
854 aa
AA seq
DB search
MMENVHLVAEDEDDLYTGYNDYNPAFDSEELDNDAGFQQAVRTSHGRRPPMTAKFPGPTT
GGRTIGTSFGAESGQGEAGGRLLKSRIPMGTSVGRPMTGAVQDGAARPMTAVRAAGYSSS
LTRGSTFDPLGQSRGPAPPLEGKNEDTPEEKIKILEKKVNDLIEESCMAHAQGDLQLALE
KAKEASRKEKALVRQREQTGTADHINLDLSYSAQFNLANQYANNDMNTEALNMYQVIVKN
KMFNNAGRLKVNMANIYFKQKNYPMAIKYYRMALDQISNAHTEMRIKIMQNIGVTFIRLG
QYSDAITSFEHIMSESPNIKTGFNLILCYYAIGDRKMMKKSFQKLICVPLGIDEEDKYIT
SNDDPHASLVIEAIKNDQLHQMERERKALAEKCIMTSAKLIAPAIESTFAAGFDWCVDMV
KSSPYVELANDLEINKAITYLRQKDFNQAVETLKTFEKKDSRVKSAAATNLSFLYFLEKD
YDQADRYAEMAMNADRYNPAALINKGNTIFVKQDYEKAAEFFKEALRNDSSCTEALYNLG
LTYKKLGRLEDALDCFLKLHAILRNSAQIMYQLASIYEMLEDPHQAIEWLMQLISVTPTD
PRVLAKLGELYDNEGDKSQAFQYYYESFRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFER
ATLIQPNNVVWQLMMASCYRRSGNYQKALETYKDIHRKFPENTECLRFLVRLCTDMGLKE
VQEYATKLKKVEKMKEIREQRVKSGRESSLRGRREGSASSASCSEMNHSPVLEHARDSGQ
SSYGTSAKGERLSAKLRSLPGTHEPYEATTPENIDASYIDPLGPQAERPKTAAKKRTEED
EFADEELGDDLLPE
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaacgttcatcttgtggcagaggatgaagatgacctctacactggttacaat
gactacaatccagcatttgactcagaggagctggacaatgatgctggctttcagcaagct
gtcagaactagtcatggcaggcggcctcctatgactgcaaagtttcctggtcccaccact
gggggaagaacaataggaacttcctttggcgcagagagtggtcagggtgaggcaggtggc
agacttttaaagtcacggatacctatgggtacatcagtgggaaggccaatgactggagca
gtacaagatggggctgcacgtcccatgacggcagtacgcgcagcaggatattcgtcctct
ttgactagaggttcaacctttgatccacttggacaatcaagaggaccagctcctccatta
gaaggaaaaaatgaagacacgccagaagaaaagataaaaatactggaaaagaaggtaaat
gatttgattgaggagagctgtatggcccatgcacaaggagatctacagttggctctagaa
aaggccaaagaggctagcaggaaagaaaaggctttggtgagacaaagggaacaaactggt
actgcagaccacatcaatttggatctgtcctattcagcgcagtttaatttggcaaaccag
tacgccaataatgacatgaacacagaagcactgaatatgtatcaagtcattgtgaaaaac
aagatgttcaacaatgctgggcggttaaaagtgaatatggctaacatctactttaaacag
aagaactaccccatggcaattaaatattatcgtatggctttggaccaaatttcaaatgca
cacacagagatgaggatcaagatcatgcaaaacattggtgtcacatttatacgtctgggc
cagtactcggatgcaatcacatcttttgagcacattatgagtgaaagcccaaacataaag
acaggctttaacctaatcctctgctactatgccatcggagaccgtaaaatgatgaagaaa
tcttttcagaaactaatttgtgtgcccctgggcattgatgaggaagacaagtacatcact
tcaaatgatgacccacatgcaagcttagtaatagaagctattaagaatgatcagcttcat
caaatggagagagaaagaaaagcactggctgagaagtgcattatgacatcagcaaagctt
attgctccagccattgagtcaacgtttgcagctggttttgactggtgtgtagatatggtc
aaaagttcaccatatgtggagctggccaatgatctagagatcaacaaagctatcacctac
ctgagacagaaggacttcaaccaggcagtggagacactaaagactttcgagaagaaggac
agtcgggtgaagagtgctgctgctactaacctttcctttctctactttttggagaaagat
tatgaccaagctgatcgttatgcagaaatggctatgaacgctgaccgttataatcctgct
gccctcattaacaaaggcaatacaatatttgtgaagcaagattatgagaaagcagctgag
ttctttaaagaagcactgcgtaatgactcctcctgcacagaggctctgtataacttaggt
ctaacctataagaagcttggacgcctggaagacgctcttgactgcttcctaaagcttcat
gccatacttagaaacagtgctcaaattatgtatcagctggccagtatatatgagatgttg
gaggatccccatcaggctattgagtggcttatgcagctcatcagtgtcactcctactgac
cctcgggtgctggctaagctgggagagttgtacgacaatgagggtgacaagtcacaagcc
ttccaatactattatgagtcttttagatactttccttcaaacattgaagtcattgaatgg
ctgggagcatattatattgacacccagttctgtgaaaaggcaattcagtattttgagagg
gcaacacttattcagcctaataatgttgtatggcagttgatgatggctagctgttacagg
agaagtggaaattatcagaaagcacttgagacatataaggacattcatcgcaaattccct
gaaaatacagaatgtctacgattccttgtgaggttgtgcacagatatgggcttaaaggag
gtacaggaatatgccaccaagctcaagaaagtggaaaagatgaaggaaattagagagcag
agggtgaagtcaggaagggaaagcagccttcgaggccgaagagaaggtagtgccagtagt
gcctcttgctctgagatgaaccacagccctgtactggagcatgccagagacagtggacaa
agcagctatggtaccagtgccaagggagagcggctaagtgccaagttaaggtcacttccc
ggcacccacgaaccatatgaggcaaccaccccagaaaacatagatgcttcgtatattgac
cctttgggacctcaagcggaaagaccaaagactgcagcaaagaaacgcacagaggaagat
gagtttgcagatgaagagttgggggatgacctgttaccagaatga
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