Trichomycterus rosablanca: 134324142
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Entry
134324142 CDS
T09921
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
134324142 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134324142 (bard1)
04121 Ubiquitin system [BR:
trn04121
]
134324142 (bard1)
03036 Chromosome and associated proteins [BR:
trn03036
]
134324142 (bard1)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134324142 (bard1)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
134324142 (bard1)
Ubiquitin system [BR:
trn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
134324142 (bard1)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
134324142 (bard1)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
134324142 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
zf-RING_6
Ank_5
Ank_3
Ank_4
BRCT
BRCT_2
zf-RING_5
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
134324142
NCBI-ProteinID:
XP_062861889
LinkDB
All DBs
Position
12:39283570..39310399
Genome browser
AA seq
717 aa
AA seq
DB search
MDESTVESATEFWGRTREAVAHFRKLLLCSKCTNILSEPVCLGVCDHLLCKSCAGPGAGC
SVCHSPAWVKDVHKNRQLGNITELFLKLEALLHPPESTASSAEPSPPSPQPSVLTKKKNL
KIWFSPKSRGVRCSVATPAEDPAPGTSKLKRSNPLSVFNFSSSQDSGSSTPPGPGPDQER
RKKRKRRSGGSVPRTGPATRHQSRRALKRMRLEAVNQQWGFGQEGVARGEKVPVDRGGEP
RSKRVSFQCSGDEIPPSESPGTRSSSERKSPAQISPPTSEVTETEPGAHSSPIVTPKRSR
PEDVDQQRTPKRPRSSPGRRRRSGPVSETSKEGQKETRSVSPAPPRAQSSPGYMKRNHKG
ETPLHLAAIKGDAEMVRELLAQGADPNLKDHAGWTPLHEACNLGHVGVVEVLLLQGAMLN
TPGYENDSPLHDAVRNGHVAAAKLLLERGALTSVLNIFGLRPVDYAATPEMREVLSSAPE
ATPGTATPISSPANQLKSAALIKRDVQVTLISSSLTQVQQNQLHQSGRVLGAKRVEVFSS
AVTHVIVPDGPAPSTLTVLRGILNGCWVVTFPWLSESLQQGRWMEEEDFEADEGPRRARV
NRVSLLPPLFDGCFFYLLGSFGTPSRDELVQLVRAGGGQLLTRQPKADSDVTQTVNTAAY
HARPDSDQAFCTHYVLYEPRNSSRPGPVRLGKVWSAPSSWLLDCIEAFGLLPVPELG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggacgaatcaactgtggaatcagctacagagttttgggggagaacccgagaggctgta
gcacacttccgaaagttgcttttgtgctcgaaatgtactaatatcctgagtgagccggtg
tgtctgggggtctgtgatcatctgctctgcaagtcatgcgcgggtcctggagccggctgc
agcgtgtgccacagtcccgcctgggtgaaggacgtccacaagaacaggcagctcggtaac
atcaccgagctcttcctgaagctggaggcgctgcttcatcctcccgagtccacagcctct
tctgcagagccctcccccccctcaccccaacccagcgtcctcaccaagaagaagaacctg
aagatctggttcagccccaagagccgcggcgtacgctgcagcgtggcgaccccggcggag
gatcccgccccgggcacctccaaactcaaacgctccaaccctctctctgtcttcaacttc
tcctcctcgcaggactcgggctcctccaccccgcccggaccgggtccggaccaggagcgc
aggaagaaacggaagagacggagcggcgggtcggtccccagaaccggacccgccacccgc
catcagagcaggcgggcgctgaagaggatgaggctggaggccgtgaaccagcagtggggg
ttcggtcaggagggcgtggcccggggtgagaaggttcctgtggatcgcggtggggaacca
cgcagcaagagggtctccttccagtgctcgggggacgaaatcccaccgagcgagagtccg
ggaaccagatcgtccagtgagcggaagtctccagctcagataagcccgcctaccagtgag
gtcacagagacggaaccaggcgctcattcttctccaatcgtgacccctaaacgatccaga
ccagaagatgttgaccaacagagaacccccaagaggcccagatcgtccccgggtcgaagg
agaaggtcgggacctgtttccgaaacgtccaaagaggggcagaaggaaacccggagcgtc
tctcctgcccctccgagggcacagagcagcccggggtacatgaagaggaaccacaaagga
gagacgccgctccacctcgccgccattaagggcgatgcagagatggtgcgagagctgctg
gcgcagggtgccgaccccaacctgaaggaccacgccggctggactccactgcatgaggcg
tgtaatctgggtcacgtgggcgtggtggaggtgctgctcctgcagggggcgatgctcaac
acgcccggctacgagaacgactcgccgctgcacgacgccgtgaggaacggccacgtcgcc
gccgccaagctgctactggagcgcggcgcactgaccagcgttctaaatatttttggcctt
cgccccgtggattatgcagcgactccggaaatgcgagaggtcctaagctcggcccctgag
gcgactcccggcacggcgacgcccatcagctctccagccaatcagctaaagtctgcagct
ctaataaaacgggacgtgcaggtcactctcatcagcagctctctgacccaggtccagcag
aaccagctgcaccaatcgggccgggtcttgggggcaaagcgtgtcgaggtgttctccagt
gctgtcactcatgtgatcgtacccgatggtcctgcaccgtccaccctgactgttctgcgg
ggaattctcaacggatgctgggtcgtaaccttcccatggctctctgaaagcctgcagcag
ggccgctggatggaggaggaggatttcgaggcggatgaggggccccggagggcccgagtg
aaccgagtcagtctgctgccgccgctgttcgacggctgcttcttctacctgctgggatct
ttcgggacgccctccagagacgagctggtacagctggtgagggcgggaggcgggcagctg
ctgacgcgccagcccaaagcagacagcgacgtgactcagacggtgaacacggcggcgtat
cacgctcggcccgactccgaccaggccttctgcacccactacgtcctgtacgagccccgg
aactcgtccagacccggtccggtccggctggggaaggtgtggtcggctccctcgtcgtgg
ctgctggactgtatcgaggcgttcggtctgcttcctgtacctgagctgggttag
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integrated database retrieval system
