KEGG   Trichomycterus rosablanca: 134324169
Entry
134324169         CDS       T09921                                 
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
trn  Trichomycterus rosablanca
Pathway
trn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:trn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    134324169 (sf3b1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:trn03041]
    134324169 (sf3b1)
   03036 Chromosome and associated proteins [BR:trn03036]
    134324169 (sf3b1)
Spliceosome [BR:trn03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    134324169 (sf3b1)
 Complex B
    134324169 (sf3b1)
 Complex C
   U2 SnRNP specific factors
    134324169 (sf3b1)
Chromosome and associated proteins [BR:trn03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    134324169 (sf3b1)
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N GST_N_4 UNC45-central DUF2298
Other DBs
NCBI-GeneID: 134324169
NCBI-ProteinID: XP_062861927
LinkDB
Position
12:complement(31981755..31995954)
AA seq 1330 aa
MAKIAKTHEDIEAQILEIQGMKAALVEEGEQGVGLDSTGFYDQEIYGGSDSRFAGYVTSI
AANEQEDDDEEDSSTTLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KRRRQKMIISPERHDPFADGGKTPDPKMPARSYMDVMKEQHLSKEEREIRLQMAEKAKSG
DLKAVNGSAASQAAAPKRKRRWDQTADQTPNTTPKKVSSWDQADSSAETPGHTPGHTPGH
TPGHTPGHTPGHTPSNSRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTP
GHATPGHGGASSSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKR
KSRWDETPASQMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDE
RNRPLADEELDAMFPEGYKVLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQVEDRSTK
QMNDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKA
ALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKI
LVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAV
VASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGL
VDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLI
PLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPF
FKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEK
IMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICG
TVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSIL
GALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSARE
WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTV
AIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLE
DALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGAL
EGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNP
YVRYELDYFL
NT seq 3993 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacgcacgaagatattgaggcgcagatcctggagatccagggg
atgaaggctgcgctggtggaggagggagagcaaggagttggcctcgattccaccggcttt
tacgatcaggagatctacggaggcagcgacagccgctttgctggctatgtgacttctatt
gctgccaacgaacaggaggatgacgacgaagaagactcttccacaactttgcttggccaa
aagaaaccagggtaccatgctccggtggcaatactcaattctattccacaatcagatgaa
cagtatgatcctttcgccgagcacagaccacagaagatctcggaccgcgaggatgagtac
aagagacgcagacaaaagatgatcatctctcctgagcgtcatgaccctttcgcagatggg
ggcaaaacgcctgatcccaagatgcctgccaggtcatacatggatgtgatgaaggagcag
catctctctaaagaagaaagagaaatcaggctacaaatggcagaaaaggctaaatctggt
gacctgaaagcagtcaatggctctgctgcatctcaagctgccgcccctaaacgcaagcgc
cggtgggaccagacagctgaccaaaccccaaacactacgcccaaaaaagtgtccagttgg
gatcaggcagattcttctgcagaaacgcctgggcatacgcctgggcatacgcctggacat
acgcctggacatacgcctggacatacacctggacatacgccttccaacagtcgctgggat
gaaacgccaggtcgtccaaagggtagcgagactccaggagccaccccaagctcacgcatg
tgggaccccacacctagccacacacctgctggtgcggccacacccggtcgagacacccct
ggccacgccactcctggccatggtggtgcctcctccagcgtacggaaaaaccgctgggat
gagacgccaaagacagaaagggagactcctggtcatggcagcggctgggccgagactcct
cgcacagacagaggtgatgagtccgtgggggagacaccaacccctggagcaagcaaaaga
aagtcacgatgggatgaaactccggccagtcagatgggctcttctacacctctacttacc
cctggaaaaactcctattggcactcctgctatgaatatggccacaccaacaccaggtcat
ctgatgagtatgaccccagagcagctgcaggcatggcgctgggaaagggagattgatgaa
cgtaaccgtccactcgcagatgaggaactggatgctatgtttcccgaaggctacaaggta
ttgcctccaccagcaggctatgtgcccattcgcacccctgcccgcaagttagctgccacc
ccaactcctattggtggcatgactggcttccatatgcaggttgaagacagatccacaaag
cagatgaacgaccagccctcaggaaacctgccattcctcaagccagacgacattcagtac
ttcgacaaacttcttgtggaggtggacgagtccaccctgagcccagaagagcagaaggaa
cgtaagatcatgaagctgctcctgaagatcaaaaatggcactcctcccatgagaaaggct
gctcttaggcaaatcacagacaaagccagggaatttggtgctgggcctctgttcaatcag
attcttccattgctcatgtctccaacgctcgaagatcaggagcgccacctgttggttaag
gttattgaccgcattctatacaaactggacgacttggttcgaccctatgtacacaagatc
ctggtggtgattgaacccttgctgattgatgaagattactatgctagagtggagggaaga
gaaattatctccaacttggcaaaggctgctggtttggccactatgatctccacaatgagg
cctgatattgacaacatggacgagtacgtgagaaacactacagctcgtgcctttgctgtt
gtggcctctgctttgggcattccatccctcctgcctttcctcaaggctgtgtgtaagagc
aagaagtcctggcaggctcgacacacgggtatcaaaattgttcagcagattgccattctc
atgggctgtgccatcctgcctcatctgcgcagcttggtggagattattgaacatggtctt
gtggatgagcagcagaaggtgcgaactatcagtgctttggctattgctgctcttgctgag
gcggccacaccctatggtatcgagtcctttgactctgtgctcaaacccctttggaagggt
atcagacaacacagaggcaagggtctggctgccttcttgaaagctattggctacttgatt
cctctgatggatgctgagtatgccaattactacacaagggaagtgatgcttatccttatc
agagagttccagtctcctgatgaggagatgaaaaagattgtgctgaaggtagtaaaacag
tgctgtggcacagatggtgtggaggccaactacatcaaaaccgagatcctgccgcccttt
tttaagcacttctggcagcaccgtatggccttggacaggcgtaactacagacagctggtg
gacactaccgttgagctggccaacaaagtcggggcagcagaaatcatctctcgtatagtg
gacgacttgaaggacgaggccgagcagtacagaaaaatggtcatggagaccattgagaag
atcatgggtaacctgggggcagcagacattgaccacaaactggaggagcagcttattgat
ggcatcttgtatgccttccaagaacagaccactgaggactctgtaatgctgaacggtttc
gggacagtcgtgaatgctctggggaagagagttaaaccttacctgccacagatctgtggt
accgttttgtggcgtttaaataataaatcggccaaagtccgtcagcaggctgctgatctc
atctctcgcacagctgtggttatgaagacttgtcaagaggaaaagctaatgggtcacttg
ggtgtggtactttatgagtacctgggagaggagtaccctgaagtgcttggaagcattctt
ggagcccttaaagctattgttaatgtaattggcatgcataagatgacgcctccgattaaa
gacctgcttcctcgattgaccccaattctgaagaacagacatgagaaagtgcaagaaaat
tgcattgatctggtgggcagaattgctgacaggggtgctgaatatgtgtctgccagggaa
tggatgcgaatttgttttgagcttctggagttgctaaaagctcacaagaaagcaatccga
cgagccaccgtcaacacgtttggctatattgccaaggctattgggcctcatgatgtactt
gccacgttgctcaacaacttgaaagtgcaggaacgtcagaacagagtgtgtacaacagtt
gcaatagctattgtagcagaaacatgttctccctttacggtcctgccagcactgatgaac
gagtatcgtgtaccagaactcaacgttcagaacggtgttctcaaatctctctcgttctta
ttcgaatatattggtgaaatgggcaaggactacatctatgctgttacacctttactcgaa
gatgctttaatggacagagaccttgtgcacaggcagacagccagcgctgtagtacagcac
atgtccctgggtgtgtatgggttcggctgcgaggactctctcaatcacttgcttaactac
gtttggcctaacgtctttgaaacctcaccacacgttattcaagctgtaatgggagccctt
gagggtcttcgtgtggctattggaccctgccgtatgctacaatattgcctgcagggtttg
ttccaccctgcaaggaaagtacgggatgtatactggaagatttataattccatctacatt
ggctcacaggatgctctgattgcacattatcctcttgtctacaacgatgagaagaacccc
tatgtccgatatgagctggactactttctgtga

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