Trichomycterus rosablanca: 134324169
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Entry
134324169 CDS
T09921
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134324169 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trn03041
]
134324169 (sf3b1)
03036 Chromosome and associated proteins [BR:
trn03036
]
134324169 (sf3b1)
Spliceosome [BR:
trn03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
134324169 (sf3b1)
Complex B
134324169 (sf3b1)
Complex C
U2 SnRNP specific factors
134324169 (sf3b1)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
134324169 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
GST_N_4
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
134324169
NCBI-ProteinID:
XP_062861927
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All DBs
Position
12:complement(31981755..31995954)
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AA seq
1330 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKAALVEEGEQGVGLDSTGFYDQEIYGGSDSRFAGYVTSI
AANEQEDDDEEDSSTTLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KRRRQKMIISPERHDPFADGGKTPDPKMPARSYMDVMKEQHLSKEEREIRLQMAEKAKSG
DLKAVNGSAASQAAAPKRKRRWDQTADQTPNTTPKKVSSWDQADSSAETPGHTPGHTPGH
TPGHTPGHTPGHTPSNSRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTP
GHATPGHGGASSSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKR
KSRWDETPASQMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDE
RNRPLADEELDAMFPEGYKVLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQVEDRSTK
QMNDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKA
ALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKI
LVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAV
VASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGL
VDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLI
PLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPF
FKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEK
IMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICG
TVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSIL
GALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSARE
WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTV
AIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLE
DALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGAL
EGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNP
YVRYELDYFL
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagatattgaggcgcagatcctggagatccagggg
atgaaggctgcgctggtggaggagggagagcaaggagttggcctcgattccaccggcttt
tacgatcaggagatctacggaggcagcgacagccgctttgctggctatgtgacttctatt
gctgccaacgaacaggaggatgacgacgaagaagactcttccacaactttgcttggccaa
aagaaaccagggtaccatgctccggtggcaatactcaattctattccacaatcagatgaa
cagtatgatcctttcgccgagcacagaccacagaagatctcggaccgcgaggatgagtac
aagagacgcagacaaaagatgatcatctctcctgagcgtcatgaccctttcgcagatggg
ggcaaaacgcctgatcccaagatgcctgccaggtcatacatggatgtgatgaaggagcag
catctctctaaagaagaaagagaaatcaggctacaaatggcagaaaaggctaaatctggt
gacctgaaagcagtcaatggctctgctgcatctcaagctgccgcccctaaacgcaagcgc
cggtgggaccagacagctgaccaaaccccaaacactacgcccaaaaaagtgtccagttgg
gatcaggcagattcttctgcagaaacgcctgggcatacgcctgggcatacgcctggacat
acgcctggacatacgcctggacatacacctggacatacgccttccaacagtcgctgggat
gaaacgccaggtcgtccaaagggtagcgagactccaggagccaccccaagctcacgcatg
tgggaccccacacctagccacacacctgctggtgcggccacacccggtcgagacacccct
ggccacgccactcctggccatggtggtgcctcctccagcgtacggaaaaaccgctgggat
gagacgccaaagacagaaagggagactcctggtcatggcagcggctgggccgagactcct
cgcacagacagaggtgatgagtccgtgggggagacaccaacccctggagcaagcaaaaga
aagtcacgatgggatgaaactccggccagtcagatgggctcttctacacctctacttacc
cctggaaaaactcctattggcactcctgctatgaatatggccacaccaacaccaggtcat
ctgatgagtatgaccccagagcagctgcaggcatggcgctgggaaagggagattgatgaa
cgtaaccgtccactcgcagatgaggaactggatgctatgtttcccgaaggctacaaggta
ttgcctccaccagcaggctatgtgcccattcgcacccctgcccgcaagttagctgccacc
ccaactcctattggtggcatgactggcttccatatgcaggttgaagacagatccacaaag
cagatgaacgaccagccctcaggaaacctgccattcctcaagccagacgacattcagtac
ttcgacaaacttcttgtggaggtggacgagtccaccctgagcccagaagagcagaaggaa
cgtaagatcatgaagctgctcctgaagatcaaaaatggcactcctcccatgagaaaggct
gctcttaggcaaatcacagacaaagccagggaatttggtgctgggcctctgttcaatcag
attcttccattgctcatgtctccaacgctcgaagatcaggagcgccacctgttggttaag
gttattgaccgcattctatacaaactggacgacttggttcgaccctatgtacacaagatc
ctggtggtgattgaacccttgctgattgatgaagattactatgctagagtggagggaaga
gaaattatctccaacttggcaaaggctgctggtttggccactatgatctccacaatgagg
cctgatattgacaacatggacgagtacgtgagaaacactacagctcgtgcctttgctgtt
gtggcctctgctttgggcattccatccctcctgcctttcctcaaggctgtgtgtaagagc
aagaagtcctggcaggctcgacacacgggtatcaaaattgttcagcagattgccattctc
atgggctgtgccatcctgcctcatctgcgcagcttggtggagattattgaacatggtctt
gtggatgagcagcagaaggtgcgaactatcagtgctttggctattgctgctcttgctgag
gcggccacaccctatggtatcgagtcctttgactctgtgctcaaacccctttggaagggt
atcagacaacacagaggcaagggtctggctgccttcttgaaagctattggctacttgatt
cctctgatggatgctgagtatgccaattactacacaagggaagtgatgcttatccttatc
agagagttccagtctcctgatgaggagatgaaaaagattgtgctgaaggtagtaaaacag
tgctgtggcacagatggtgtggaggccaactacatcaaaaccgagatcctgccgcccttt
tttaagcacttctggcagcaccgtatggccttggacaggcgtaactacagacagctggtg
gacactaccgttgagctggccaacaaagtcggggcagcagaaatcatctctcgtatagtg
gacgacttgaaggacgaggccgagcagtacagaaaaatggtcatggagaccattgagaag
atcatgggtaacctgggggcagcagacattgaccacaaactggaggagcagcttattgat
ggcatcttgtatgccttccaagaacagaccactgaggactctgtaatgctgaacggtttc
gggacagtcgtgaatgctctggggaagagagttaaaccttacctgccacagatctgtggt
accgttttgtggcgtttaaataataaatcggccaaagtccgtcagcaggctgctgatctc
atctctcgcacagctgtggttatgaagacttgtcaagaggaaaagctaatgggtcacttg
ggtgtggtactttatgagtacctgggagaggagtaccctgaagtgcttggaagcattctt
ggagcccttaaagctattgttaatgtaattggcatgcataagatgacgcctccgattaaa
gacctgcttcctcgattgaccccaattctgaagaacagacatgagaaagtgcaagaaaat
tgcattgatctggtgggcagaattgctgacaggggtgctgaatatgtgtctgccagggaa
tggatgcgaatttgttttgagcttctggagttgctaaaagctcacaagaaagcaatccga
cgagccaccgtcaacacgtttggctatattgccaaggctattgggcctcatgatgtactt
gccacgttgctcaacaacttgaaagtgcaggaacgtcagaacagagtgtgtacaacagtt
gcaatagctattgtagcagaaacatgttctccctttacggtcctgccagcactgatgaac
gagtatcgtgtaccagaactcaacgttcagaacggtgttctcaaatctctctcgttctta
ttcgaatatattggtgaaatgggcaaggactacatctatgctgttacacctttactcgaa
gatgctttaatggacagagaccttgtgcacaggcagacagccagcgctgtagtacagcac
atgtccctgggtgtgtatgggttcggctgcgaggactctctcaatcacttgcttaactac
gtttggcctaacgtctttgaaacctcaccacacgttattcaagctgtaatgggagccctt
gagggtcttcgtgtggctattggaccctgccgtatgctacaatattgcctgcagggtttg
ttccaccctgcaaggaaagtacgggatgtatactggaagatttataattccatctacatt
ggctcacaggatgctctgattgcacattatcctcttgtctacaacgatgagaagaacccc
tatgtccgatatgagctggactactttctgtga
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