Trichomycterus rosablanca: 134324276
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Entry
134324276 CDS
T09921
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
134324276 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134324276 (ddx3xa)
03041 Spliceosome [BR:
trn03041
]
134324276 (ddx3xa)
03036 Chromosome and associated proteins [BR:
trn03036
]
134324276 (ddx3xa)
Enzymes [BR:
trn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134324276 (ddx3xa)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134324276 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
134324276 (ddx3xa)
Spliceosome [BR:
trn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
134324276 (ddx3xa)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
134324276 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
APC_u13
Motif
Other DBs
NCBI-GeneID:
134324276
NCBI-ProteinID:
XP_062862074
LinkDB
All DBs
Position
12:20215214..20239762
Genome browser
AA seq
766 aa
AA seq
DB search
MSHVVVDNSHGLDQQLSALDLNSADGGGTGSRYIPPHLRNKDVAKNAGNAYSSNRQSGFS
MPPVLSCYPGPPVQELSFYHTYSGGWPERCDSPGWDATRANCFVNGYHDNRMNGGANFGR
GIPRNDRSGRGSFRGTRGGGTFNPPMPNTNYSGFENKDAGWNAGLNRDAYSSFGGRSDRG
KSAFFNDRGTGSRGRFDRGSFGSGGGGMGNSRWVEESRDDDDWSKPIPPNERLEQELFST
SNTGINFEKYDDIPVEATGNNCPGPIDNFHDVDMGEIIMGNITLSRYTRPTPVQKHAIPI
IKSKRDLMACAQTGSGKTAAFLLPVLSQIYTEGPGEALQASKNSGQENGKYGRRKQYPIS
LILAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVD
MMERGKVGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTMMFSATFPKEI
QILARDFLEEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATVIPSEVQESAT
ETPERPGKDSLTLVFVETKKGADALENFLYHEGYACTSIHGDRSQRDREEALHQFRSGQC
PIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNI
TKDLLDILVEAKQEVPSWLESLAFEHQHKSSNRGRSKRFSGGFGARDYRQIPGGSNSFGN
RGARSAAGNRGFGGNKGAFGNFVSDGYGGSYGNYGGSYTQVDWWGN
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgacaattcacacggtctagatcagcagctttctgccctagac
ttgaactctgcagatggtggaggcacaggcagccgttacattccacctcacttgagaaat
aaagatgtcgctaaaaatgcaggaaatgcttattcctctaatagacagagcggtttttca
atgccaccagtactgagctgttacccaggacctccagtccaggagctatccttctatcac
acctatagtggtggctggccagaaagatgtgactctcctggatgggatgccactcgcgcc
aattgctttgttaatggctaccatgacaatcgaatgaacggaggtgcaaacttcggacgt
ggcattcctcgcaatgacagaagtggacgtggcagcttccgtggcactaggggtggtggt
acctttaatccgcccatgccaaacacaaattacagtggcttcgaaaacaaagatgccggc
tggaatgcgggtttaaacagggatgcctactccagctttggtggacgttctgacagagga
aagtctgctttctttaatgacagaggaacaggatcaagaggaaggtttgatcgtggcagc
tttggaagtggaggaggtggaatgggaaatagtcgttgggtagaggagtccagagatgat
gatgactggtcgaagcctatcccacctaatgaacgtctggaacaggagctgttctctaca
agcaatacggggattaactttgagaaatatgatgacattcctgttgaggccactggtaac
aattgccctggccctatcgataatttccatgatgttgacatgggtgaaatcatcatgggt
aatataactctaagccgatacacccgtcccacaccagtgcagaagcatgccattcccatt
atcaagtcaaagagggacctaatggcctgtgctcaaacaggctctggaaagactgcagca
ttcctgctcccagtgttaagtcagatctacaccgaagggccaggagaggctctacaggct
tctaaaaacagtggccaggagaatggaaaatatggccggcgtaaacagtaccccatctct
ttgattctggctccaaccagagaacttgctcttcagatctatgatgaagccagaaaattt
gcataccgctccagggtgcgcccatgtgtggtatatggaggagctgacattggccagcag
atccgcgatctggagaggggatgccacttgttagtggctacacctggtcgtctggtggac
atgatggagcggggaaaggttgggctggattattgcaattacctagttctggacgaagcc
gacagaatgttggacatgggctttgagccacagatcagacgtatagtggagcaggacacc
atgcctcctaaaggtgttcgccaaaccatgatgttcagtgccacctttcctaaggagatt
cagatcttggcgcgtgactttctggaggagtacatctttttggcggttggtcgtgtaggc
tccacctctgaaaacatcacccagaaagtggtttgggtggaggagagtgacaaacgctca
ttcttgctggacctgcttaatgccacagtcattccaagtgaggttcaggaaagtgcaact
gaaactcctgagagaccaggcaaggattcactcacgctggtgtttgtggagaccaagaaa
ggtgcagatgctttggagaacttcctgtaccatgagggatatgcttgtaccagcatccat
ggtgaccgatctcagagggatagagaagaggcgcttcaccagttccgctcaggccaatgc
cccatcatggttgccacagctgtggctgcccgtggacttgacatctccaatgtgaagcat
gtgattaactttgacctgcccagtgacattgaggaatacgtccatcgcattggacgtact
ggccgtgttggaaatcttggtttggccacttctttctacaatgataagaacagcaacatc
actaaagatctgctggacatcctggtggaggctaaacaggaggttccttcctggctggag
agcttggcttttgagcaccagcacaagagcagcaaccgaggccgatccaagaggttttct
ggtggcttcggagccagagattatcgtcaaataccaggaggtagcaacagctttggcaac
cgtggtgctcgcagtgctgcaggcaaccgaggttttggtggtaataagggtgcttttgga
aattttgtcagtgatggctatgggggaagttacgggaactatggaggaagctacacccaa
gttgactggtggggcaactaa
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