Trichomycterus rosablanca: 134324347
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Entry
134324347 CDS
T09921
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
trn
Trichomycterus rosablanca
Pathway
trn03013
Nucleocytoplasmic transport
trn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134324347 (upf3a)
03015 mRNA surveillance pathway
134324347 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134324347 (upf3a)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134324347 (upf3a)
mRNA cycle factors
P-body specific factors
134324347 (upf3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
DUF6980
Motif
Other DBs
NCBI-GeneID:
134324347
NCBI-ProteinID:
XP_062862229
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All DBs
Position
12:19598938..19612920
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AA seq
481 aa
AA seq
DB search
MRAEKEQMTGSRDRSVVEIQFRDAQREQDINLANSKHKEEKKEIFTKVVIRRLPPSLSKD
QLEEHLSPLPPFDYFEFFPADQSLYPHLFSRAYINFKNPEDIVHFRDRFDGYVFIDNKGL
EYPAIVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSVANPETLLGEI
EAKTRELIAKKTTPLLEYIKSKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKEIKIKLLKKCDREDEVESDRLKDKGDSGETDRNKWDKPTGQNKSK
EPKDSRVQPESDKEQREGHGRRQRDKDHRGREEERKRQRHHYEFDKFMRRKEETKWGKGY
CHDRAKKDGHHHGYSYCSETGDKMGKEERDEMANRKERIRNKSVLVHQEKRTSQSEGPDH
IGGALPAKDRPAMQLYQPGARNRKRMGSGNKGFDFSTLSPESTEPCYELAVGTGSEKSGD
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagggctgagaaggagcagatgacgggcagcagagacaggagtgtggttgagatacag
tttagagacgctcagagggaacaggacatcaatttagccaactccaaacacaaagaggag
aaaaaagaaatttttactaaggttgtgattcgacgtctgccacctagtttgtcaaaagac
cagcttgaagagcatcttagtccgcttccaccttttgactattttgagttttttcctgct
gatcaaagcctatatccacatcttttctccagagcatacataaactttaaaaacccagag
gacattgttcacttcagagatcgttttgatggttatgttttcattgacaataaaggtctg
gagtatccagctatagtagaatttgcaccttttcagaaagtttccaagaaaaagcttaag
aagaaagatgccaaagcaggaagtatcgaagaagatccagaatacaaacgatttctggag
aactactcatgtgatgaggagaagtcagtggcaaatccggaaacattattgggagagatt
gaggctaaaacaagagagcttatagctaaaaagacaacaccacttctggaatacattaag
agcaagaagttggaaaagcagagaatccgagaggaaaaaagggaggaaaggcgacgaaga
gaacttgagaaaaaacggcaaagggaagaggaaaagaggaaacgcagggaagaagaaagg
cggaaacgcaaagaggctgaaaaacagaagaaactctctgaaaaggagattaaaatcaag
ctcctaaagaaatgtgacagggaggatgaggtggaatcagacagactgaaggacaaaggg
gacagtggagagacagacaggaacaagtgggacaaacctacaggccaaaacaaatcaaag
gaaccaaaggacagtagagttcagccagagagtgataaggagcagcgggaaggccatggc
cgccggcagagggacaaggatcaccggggccgagaagaggagcgcaagcggcagcggcac
cactacgagtttgacaagttcatgcgccgaaaggaggagaccaaatggggcaaaggctac
tgtcatgacagagccaagaaagatggccaccaccatggctactcctactgctctgagaca
ggagacaagatgggcaaggaggaaagagatgaaatggcgaacaggaaggagcgcattcgc
aataagtctgtgttagtgcatcaagagaaaaggacctcccagtctgaggggccagaccac
ataggaggggctctgccagccaaggaccgacctgccatgcagctgtaccagccaggagct
cgaaaccgcaaacgcatgggctctggaaacaaaggcttcgactttagcaccctctctcca
gagtctactgaaccatgctatgagctggctgtaggaacaggctcagagaagagtggagat
gagtga
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