Trichomycterus rosablanca: 134324396
Help
Entry
134324396 CDS
T09921
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
trn04147
]
134324396 (col18a1a)
00535 Proteoglycans [BR:
trn00535
]
134324396 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
trn00536
]
134324396 (col18a1a)
Exosome [BR:
trn04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
134324396 (col18a1a)
Proteoglycans [BR:
trn00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
134324396 (col18a1a)
Glycosaminoglycan binding proteins [BR:
trn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134324396 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
134324396
NCBI-ProteinID:
XP_062862299
LinkDB
All DBs
Position
12:512714..602693
Genome browser
AA seq
1401 aa
AA seq
DB search
MSRLGFLLGLGVLAGLCVGRSCAWFWFDYAKDKSPATQTPGLTTTPGTTVPTEAPGVENL
ETGSTEASDTDREVQDKAEETENGGESGPEEKVVTLQQLIGDPLPDGITRVEEPEPGYVF
DQNSKIGQLARAYLPSSFYRDFSLLFNLKPTSTKAGVVLSVTDASQKIMYVGVKLSAVQD
GKQNIVLFYTEPDSQSSYEAASFSVPSFVDYWTRFSIGVMEEQVTLYMNCDAEPRVLRFE
RSPDEMELESGAGIFVGQAGGADEDQFVGVIGDLQIIGDPRAAGRYCDEEDDSDMASGDF
GSGDYGSRYTTLTVTQQPSRPIQLPPVTSHVVTVSKETHTGAVSGFGRVSGPSLAESVLI
SGSSSGSKDSRRTSSSEIRRTSSSTQSAGTRGEKGEKGAKGVRGPEGPKGDTGSSTGGSG
GGASGEKGSPGEKGMKGAAGFGYPGSKGDQGPAGPQGPPGPPGPSADVVERGDGSVVQRV
AGPPGPPGPLGPPGRAGTDGEPGDPGEDGIVGPPGFPGTPGDAGVKGQKGDKGEGQPGPR
GPPGLPGPPARSDRPTFVDMEGSGFGDLEALRGLPGFPGVPGPPGPPGPVGPPGATGASS
TAVSGGPGPAGPAGKDGAPGQPGLPGSPGADGKPSLPGSRGEKGDPGELGLPGAVGEKGS
QGPPGSAGGTGQPGLAGLPGPMGPVGPPGPPGPPGSSYHVGFDDMESSGISVFSNVPGVR
GPEGVQGPPGLPGMPGPKGERGTEGPPGGDGRPGLDGFPGVQGPQGLLGEKGDRGEPGRD
GIGQPGLPGPPGPPGQIIHRHSENIDKVFGHSEGPMGPKGDKGEAGATGYGVKGEKGEPG
VVIGPDGSPFFLGGAAGPRGERGLPGPVGPSGSYGPPGMKGEIGMPGRPGRPGVNGYKGD
KGELGSGIGGAYPGPPGPPGPPGPPGPSGSHPARDRFGTYEDTGTVYQGTKGEKGERGVS
GIPGTTGNVDLYTLKNQLKGERGESGLRGEKGEPGGFFPSNFGGVQGPQGPPGPPGPQGE
SIRGPSGPQGPPGSPGVGYEGRPGNPGPAGPPGPPGSPSLPGPYRPNIPGPPGPPGPPGP
GVLIVRSYDEVLVKAPREEEGTLIYILDKSDLYIRARGGIRQVTLGSYVPFYREASQDNE
VHIPLNNGAGHISHSGERTNNPSNPQYDTHSPPLPDPRYPPQPEPRYPPNTDGLSPVVSP
PVRKLNPPVVVPGHHPEGHVHTSGPGLHLIALNSPQVGNMRGIRGPDFLCFQQARAAGLK
GTYRAFLSSKLQDLFSIVRKSDRRTLPIVNLKDQVLFSSWESLFSESEGRMRNNAPIYSF
DGRDIVRDSAWPEKMVWHGSNKNGHRQMDNYCEAWRTADRAVTGLASSLQAGQLLQQKPS
SCSSNYIVLCIENSYITQSKK
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggctcgggttcctgcttggcctcggggtgctggccggtctctgcgtgggacgg
tcctgcgcgtggttctggtttgactacgcgaaggataaaagcccggccacacagacaccc
gggctcacgaccacgccgggcaccaccgtgcccacggaagcacccggagtggagaacctg
gagacaggaagcactgaggcttcagacacggatagagaggtgcaggataaagcggaggag
acggagaacggaggggaatctggacctgaggagaaggtggttaccctgcagcagctgatt
ggcgaccctcttcccgatggcatcacccgggtggaggaaccagaacccggctacgtgttc
gaccaaaactctaagatcggccagctcgcccgggcgtaccttcccagctccttctaccgt
gacttctctctcctcttcaacctgaaacccacgtccaccaaagcgggcgtggtcctgtcc
gtcaccgacgccagccagaagatcatgtacgtgggcgtgaagctgtcggccgtgcaggac
gggaagcagaacatcgtcctgttctacaccgagcccgactctcagtcctcctacgaggcg
gccagtttcagcgtgccctccttcgtggactactggacccgcttctccatcggcgtgatg
gaggagcaggtgacgctctacatgaactgtgacgccgagcctcgggtgctgcggttcgag
cgctctccggacgagatggagctggaatccggagccgggatctttgtggggcaagcagga
ggagccgatgaggatcagtttgtgggagttatcggggacctgcagatcatcggagaccct
cgtgcagccggacgctactgtgatgaagaggacgactcggatatggcctcgggagatttc
ggcagcggtgattatggaagcagatacaccacgctcacggtcacacagcagccgtccaga
ccgattcagcttccgcccgtcacgtctcacgtggtcacagtgagcaaagagacacacaca
ggagcggtcagcggttttggacgagtttctggtccgagtctggctgagtctgtgttaatt
tccggctcatcgtccggttccaaagatagcaggagaacctcgagttctgaaatcagacga
acatcgagctcgactcagtcagcaggaacaagaggcgagaaaggagaaaagggagcaaaa
ggtgttcggggccctgaggggccaaagggagacacaggatcaagtactggtggatccggt
ggaggtgctagcggagagaaaggaagcccaggagagaaaggaatgaagggtgctgcagga
ttcggatatcctggatcaaagggtgaccaaggaccagcagggcctcaggggcctcccggt
ccccccggaccctctgctgatgtcgtggagaggggagacggttctgtggttcagagggtg
gcaggaccacccggacctccgggaccactggggccaccgggacgtgctgggaccgacgga
gaacctggcgacccgggtgaagacgggatcgttggtccgccaggtttcccaggaacccca
ggagacgctggagtgaagggacaaaagggtgataaaggtgaaggtcagccaggacccaga
ggaccacccgggctccccggaccaccagctcgctctgacagacctacgtttgtggacatg
gagggctcaggctttggtgatctggaggctctgcgcggacttccgggttttcctggtgtt
cctggccctcctggcccccctggacctgtgggacctccaggtgccactggtgcttcatcc
actgctgtttctggtggacctggacctgctggtcctgctggaaaggacggagctcctgga
caaccggggcttccaggctccccgggtgctgacggcaaaccaagcctcccgggctccaga
ggagagaagggggaccccggcgagctcggactgcccggagcggtgggagaaaaggggtca
caggggcctcctggatctgcaggagggactggacagcccggtcttgctggtctccccgga
ccgatgggacctgtgggaccaccaggacctcccggacctccaggatcgagctaccatgtc
ggctttgatgatatggaatcctctggtattagtgttttcagtaatgtgcctggagtcaga
ggacctgaaggtgtacagggtccaccaggtctgccggggatgccggggccgaaaggagag
cggggcactgaggggcccccgggaggtgacggtcgccccggactggatggttttcctgga
gttcaggggccacaggggctgctgggagagaaaggagaccgaggggagccaggacgggac
ggtatcggccaaccgggtctgccaggcccacccggaccccctgggcagattatccatcgt
cattcagaaaatattgataaagtgtttgggcattctgagggcccgatgggaccgaagggt
gataaaggggaagcgggcgcgacaggctacggcgttaagggtgagaaaggtgaacccggg
gtggttatcggacctgacggaagcccgttcttcctcggtggagctgcaggtccaagaggt
gagcggggacttcctggaccagttggaccttctgggtcgtacggtcctcccgggatgaag
ggtgagatcggaatgccaggcagacccggtcgcccgggtgtgaacgggtacaaaggagac
aaaggagagctgggctcgggcatcggaggagcttatcctggtccaccagggcccccaggg
ccccccggtccccccggaccctcaggatctcacccggctcgggatagatttggtacgtat
gaggacacgggaacagtttatcagggaactaaaggggagaagggagagcgaggagtgtcg
ggtataccaggaacgacaggtaacgtggacttgtacacgttgaagaaccagctgaagggc
gagcgaggagaatctggtctgaggggagagaagggtgagccgggcgggttcttcccctct
aatttcggaggggtgcagggaccacagggaccgcctggacctccgggtcctcaaggagag
tcgatcagagggccctccggtccgcaggggcccccgggatctccgggcgtgggttacgaa
ggccgcccaggaaaccccggaccagccggaccccccggaccacctggttcaccctcctta
cccggaccttacagacccaacattcctggacctcccggcccgcctggaccccccggaccc
ggagtcctgattgtgagatcgtacgatgaagtgctcgtaaaagcaccccgagaggaagag
ggcactctcatctacatcctggacaaaagcgacctctatatccgagcgcggggcggaatc
agacaagtcacgctcgggagctacgttcccttctacagagaagcctcgcaggataatgaa
gtgcacatcccgctgaacaacggcgccgggcacatctcccacagcggcgagcgcaccaac
aatccctccaacccccaatacgacacgcactctcccccgctcccggatcccaggtacccg
ccccaacccgagcccaggtacccacccaacaccgatggcctttcaccggtggtttcgccc
cccgtgcgcaagctgaacccgcccgtcgtcgttcccggacatcatcctgaggggcacgta
cacacgtccggacccgggctgcacctgatcgccctgaacagccctcaggtggggaacatg
cggggcatcaggggcccggacttcctgtgcttccagcaggcgcgtgcggcgggtctgaag
ggaacctaccgcgccttcctgtcctccaaactccaggatctgttcagcatcgtacgcaag
tccgacaggaggacgctgcccatcgtcaacctcaaggaccaagtgctgttcagcagctgg
gaatctctgttcagtgagtcggagggcaggatgaggaacaacgcgcccatctactcgttt
gatggcagagatatcgtccgggacagcgcctggccggagaagatggtgtggcacggctcc
aacaagaacggtcaccgtcagatggacaactactgcgaggcgtggaggacggcggaccgg
gcggtgacgggtctggcgtcgtctctgcaggccggtcagctcctccagcagaaacccagc
agctgctccagcaactacatcgtgctgtgtatcgagaacagctacatcacccagtccaaa
aaataa
DBGET
integrated database retrieval system
