Trichomycterus rosablanca: 134324564
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Entry
134324564 CDS
T09921
Symbol
ddx18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trn03041
]
134324564 (ddx18)
03009 Ribosome biogenesis [BR:
trn03009
]
134324564 (ddx18)
Enzymes [BR:
trn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134324564 (ddx18)
Spliceosome [BR:
trn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
134324564 (ddx18)
Ribosome biogenesis [BR:
trn03009
]
Eukaryotic type
90S particles
Helicases
134324564 (ddx18)
Pre-60S particles
134324564 (ddx18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
134324564
NCBI-ProteinID:
XP_062862519
LinkDB
All DBs
Position
12:5623929..5633029
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AA seq
649 aa
AA seq
DB search
MADLQMKLLRKKIQKRNEKNKERKLRQKQREEDENESKTFSEECETNDETLAADPVREEP
EENEKSESTDGNTVTPNSSKKKKKKKRKLDEAGDATASNVKKVKRGNSHTVESADDVDDQ
ENETHEDEEQNGEEDADEEDEPQLPHGLTGAFEDCSFASLTELVSENTLKGVKEMGFENM
TEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNGTGVVILSPTRE
LAMQTYGVIKELMTHHVHTYGLIMGGSNRSAEAQKLGNGVNIMVATPGRLLDHLQNTPGF
MYKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQTMLFSATQTRKVEDLARISLKKE
PLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKFHY
ELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDP
PDDPKEYIHRVGRTARGINGIGHALLILRPEELGFLRFLKQAKVPLSEFEFSWTKISDIQ
SQLEKLIEKNYYLHKSAQEAYKSYVRAYDSHSLKQIYSVQTLNLQQVALSFGFKVPPYVD
LNVHSSKGGKLQKRGGGGGFGYQKSKNVNKAKIFKHVNKSKGDRRQFSR
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctgcagatgaagcttcttcggaagaaaattcagaagagaaatgaaaagaac
aaagaacgcaaactgcgtcagaagcagagagaggaggacgagaatgaatctaaaacattt
agtgaagaatgtgagaccaatgatgaaaccttagctgcagatccagtgcgggaggagcct
gaagaaaatgagaagagtgaatccactgatgggaacactgttacaccgaacagcagcaag
aagaagaaaaagaaaaaaaggaaacttgatgaagcaggggacgccacggccagtaatgtt
aaaaaagtcaaacgggggaacagtcacacagtggagtctgccgacgacgtagatgaccaa
gaaaatgagacacatgaggatgaagagcagaatggtgaggaagatgcagacgaggaagat
gaaccgcagctacctcatggactaacaggagcttttgaggattgttcgttcgcatcactg
accgagcttgtgagtgaaaatactctcaagggtgttaaggagatgggcttcgagaacatg
actgagatccagcacaaaactatacgccctctgctggagggaagagacgtacttgcagct
gctaaaacaggcagcggaaaaactctggccttcctcattccttccattgaacttatctac
aagctgaaattcatgcctagaaatggaactggagtggtgattttgtccccaacccgtgag
ttggccatgcagacgtatggtgtgataaaagagctcatgacgcatcacgtgcacacatat
ggtctgattatgggtggcagcaaccgctctgctgaagcccagaaacttggtaatggtgtc
aacatcatggtggctacacctggcagactgctcgaccacctacagaacacacctggcttc
atgtacaagaacctccagtgtctcattattgatgaagcagacagaattctggaggttggg
tttgaggaggaacttaaacagatcatcaaactgctgccgaagaaaaggcagaccatgttg
ttctcagctacacagacgaggaaggtagaggatctggctcggatctctctgaagaaagag
cccctgtatgtgggagtggatgataataaagacacagctactgtggaaggactggaacag
ggatatgtggtgtgtccttctgagaagcgctttttgttgctatttacattcctgaagaag
aaccgtaagaagaagctgatggtgtttttctcttcctgcatgtcggtgaagtttcactat
gagctgctcaattacatcgacctgccagttatggccatccatggcaagcagaagcagaca
aagagaacgaccacgttttttcagttctgtaatgcggactctggcatcttgctctgcact
gatgttgctgccagaggactggacatccccgaggtggactggattgtccagtacgacccg
ccagatgacccaaaggagtacattcaccgtgtgggtcgaactgctcgaggtattaatggt
ataggccatgcgctcctcatccttcgacctgaagagctcggctttctacgttttctcaaa
caggccaaggtcccattgagtgagtttgaattctcttggactaagatctcagatattcag
tcacagttggagaagctaatcgagaagaattactatctccacaagtctgcccaggaggcc
tacaagtcgtacgtgagggcgtatgattcacattctctcaaacagatctacagtgtacag
acgttaaacctccaacaggtggcgctgtccttcggcttcaaagttccgccttatgttgac
ctcaatgtacacagcagtaaaggtgggaagctgcagaagaggggaggaggtggcggattc
ggctaccagaaatcgaagaacgtgaacaaagccaagatctttaagcatgtgaacaagagc
aagggagatcgtagacagttctcccgctga
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