Trichomycterus rosablanca: 134324651
Help
Entry
134324651 CDS
T09921
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
trn
Trichomycterus rosablanca
Pathway
trn04382
Cornified envelope formation
trn04510
Focal adhesion
trn04512
ECM-receptor interaction
trn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134324651 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134324651 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134324651 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134324651 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
trn04147
]
134324651 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
trn00536
]
134324651 (col4a2)
Exosome [BR:
trn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134324651 (col4a2)
Glycosaminoglycan binding proteins [BR:
trn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134324651 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134324651
NCBI-ProteinID:
XP_062862629
LinkDB
All DBs
Position
12:15338577..15468564
Genome browser
AA seq
1667 aa
AA seq
DB search
MKFEVRMEAVMHSQQRALVQILRVLLICFVFLLLTSEVHAGGKKYDGPCGGRDCSGGCQC
FPEKGARGQPGPLGPQGPSGPPGRTGDPGLQGHKGGKGDSGVPGIEGPKGAQGLIGSPGF
PGLDGIPGHPGQPGSRGRPGADGCNGTKGESGVPGLQGYDGEQGRSGLPGRKGEKGDLLD
VNIYMLRFRGDPGLPGYPGPTGPPGIPGQQGLPGFNGYLGEKGNRGPPGPPGKPPAQLKG
VKGEAGDVGEPGLPGNQQQTGPLLGPKGEKGIKGEPADTFISKGERGTMGPAGQRGNPGR
DGLLGKKGDAGFAGFPGQQGRKGEPGEPGELIPTGPSGGGAGYPGPQGEPGQIGDYGPTG
AKGSQGPPGPDPQGTPIAGEFGPKGEKGLKGEAGEPGIPATYPGSPGSDGLQGRPGPPGP
KGTFSEIYKGPEGLQGRPGSAGTKGQKGDHGQCQCSSTSPPGAPGNRGDPGMAGEWGQQG
DQGDPGPRGTNGLPGFPGRTGVPGAKGHKGDRKDVTEKGPLGDQGDPGRHGEHGEDGRDG
RNGFSGPPGFRGPPGEGPVGELGDKGYPGRPGSPGFPGQGGDPGQVTEGPRGIRGVDGDP
GFRGYDGIPGPPGQSGDCSPPGEGGEWSTAGDCIVAPGAPGERGQIGPPGFKGFPGVPGP
KGFTGSEGELGPKGEQGDQGRGGPSGTVGFTGPRGDSGNPGFKGAKGLPGTGGKPGLSGD
PGLKGPDGDALGASPGSTGEPGLPGTQGSKGPSGDAGIIGYPGSMGMPGMIGMKGESGPD
GLHGEIGRRGPAGTFGFPGVPGRAGPPGPQGITGGPGFRGETGHRGDSGPPGPFGTKGFK
GEPGNDAGPGETGPQGNQGHPGYAGRPGLAGLKGVKGSHGMTGFEGMQGNTGQRGLPGQK
GVTGIPGSAGLKGNMGHHGEKGERGLPGQPGEISTMQIMHMKDTMKGTKGAQGASGDPGF
IGPRGIKGFPGIPGQEGHHGKPGQPSYKKGAQGHSGPQGLPGLKGMPGFTGPPGIRGFPG
GTGPRGEKGSSGAYGATGVHGTDGDNGETGDIINLPGLTGTRGQSGQSGPSGQTGFPGET
GNRGSPGFDGIKGMKGILGEPGKEGPSGAKGLHGFPGNQGTKGWSGEPGRPGTPGKAGHP
GQKGFPGAGGIFGLDGLKGQKGLQGVPGANNWGLPGVPGTKGEIGDTGTPNTEDGLPGNT
GHKGSAGDPGDQGEPGPSGIQGPTGDPGFPGRKGITGDTGPRGHKGFPGYPGATGLPGFP
SPFGPKGDRGAQGQFGILGLKGIHGDAGEKGSPGQPGVSGKKGVSGDQGMMGIPGQRGLQ
GDRGFSGPKGETGTPGYPGAPGAMGLPPVPVKIPGERGPSGPFGIIGPRGVQGKIGPEGP
PGDQGFVGPKGQIGMPGFPGIPGNPGIRGEAGQMGHPGLQGEEGYHGRPGTPGPKGMPGR
SVSVGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFNTM
PFLYCNPGDICYYASRNDKSYWLATTAPIPMMPVEEFEIKPYISRCSVCEAPTVAIAVHS
QDTTIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECNGAKGT
CHYFANKHSFWLTSIDESFQTSPASETLKAGQHLSRISRCQVCMKNL
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagtgcggatggaggcagtgatgcattcccagcagcgggcactagtgcaa
atcctgagggttctgttgatttgcttcgtctttctccttttgacgtcagaagttcacgca
ggtggtaagaagtacgacgggccatgtgggggcagagattgcagtggtgggtgtcagtgt
tttcctgagaaaggtgcaaggggtcagccaggtcctcttggccctcagggcccatcaggg
cctccaggacgtacaggcgatcctggtttgcaaggccataagggaggaaagggtgattct
ggtgtgcccggcattgagggtccaaagggggctcagggtctgattggaagtccagggttt
ccaggattagatggtattccaggtcacccagggcaaccaggttcccgaggaagaccaggt
gctgatggctgtaatggaaccaagggagagtctggagtaccaggcttgcaaggatatgat
ggcgagcagggaagatcaggtctgcccggcagaaagggtgagaaaggggacctcttggat
gttaacatttacatgctaagatttcggggagacccaggactgccaggatatccaggacct
acaggacctcctggaatacccggtcaacaaggactgccaggttttaatggttacctgggt
gaaaagggcaacagaggacctccaggaccaccgggtaaaccacctgcccagctgaagggt
gtaaaaggagaagcgggtgatgttggagaaccaggactaccaggaaatcaacaacaaact
ggacctcttctgggaccaaaaggcgagaagggtattaaaggtgaaccagcagacacgttt
atttccaaaggagaacggggcaccatgggacctgcaggacaacggggaaacccaggaaga
gatggactcctaggaaaaaagggtgatgctgggtttgcaggttttccaggtcagcaagga
cgtaagggagagccgggagagccaggagagctgattcctacaggcccttcaggtggagga
gctggctatccaggtccacaaggagaacctgggcaaataggagattatggtcccacagga
gcaaaaggttcacaaggtccccctgggcccgatcctcagggaactccaatagctggtgaa
tttggaccaaaaggcgaaaagggactgaagggtgaagctggcgaacctggtatccctgcc
acataccctggttctcctggttctgatgggctacaaggacgacctgggccacctggtccc
aaaggaacattttctgagatatataaagggccagaaggattacaaggacgtccaggaagt
gctgggaccaagggccagaaaggtgaccacggtcaatgtcaatgctcatcaacttcccct
cctggagcccctggcaaccgtggagaccctggcatggctggagagtggggtcagcagggt
gatcagggagacccaggacctagaggcaccaatggtctacctggttttcctggtaggaca
ggcgtgcctggagccaagggacataaaggagacagaaaagacgttacagagaaagggcca
cttggagatcagggagacccaggtagacatggtgaacatggagaagatgggagagatgga
cgcaatgggttcagtggtccacctggatttcgtggtcctcctggagagggtccagttggg
gagcttggagataagggttacccaggaaggccaggttcgccaggattcccaggacaagga
ggagatccaggacaggtgacagaaggccccaggggtataaggggtgttgatggtgatcca
gggtttaggggttatgatggaattccaggccctcctggccaatcaggggattgtagtcca
ccgggagaaggaggagagtggagtactgcaggcgattgtattgttgcacctggagctcca
ggtgagagaggacaaattggacctcctggattcaagggattcccaggagtacctggtcct
aaaggatttactggaagtgaaggtgagctgggacctaaaggagagcaaggggaccaaggc
agaggaggcccatctggcacagtaggtttcactggacctcgtggagactcgggtaatcct
ggatttaaaggggccaaggggcttcctggcacgggaggtaagccagggctcagtggtgat
ccaggtctcaaggggcccgacggtgacgctttgggagcatcccccgggtctacaggagaa
ccaggattgccaggaacacaggggagcaaaggtccctcaggagatgctggcattattgga
taccctggttctatgggaatgcctggaatgattggaatgaagggtgaatcaggtcctgat
ggcttacatggggaaattggaagacgtggacctgcaggaacgtttggttttcctggggtt
cctggtagagccggaccccctggacctcagggaatcactggaggaccaggttttagagga
gaaacaggccatcgaggagatagtggccctccagggccatttggaacaaagggttttaaa
ggagagcctggtaatgatgctggaccaggggaaactggaccccaggggaatcaaggacat
cctggatatgctgggcggcctggtttagctggacttaaaggtgtaaagggttctcatggc
atgacaggcttcgaaggaatgcaaggaaatactggtcagaggggactgccaggccagaaa
ggagtgacaggcataccaggctcagcagggctaaaaggaaacatgggtcatcacggagaa
aaaggcgagaggggacttccaggccaaccaggagaaatatcaaccatgcaaattatgcat
atgaaagataccatgaagggtacaaaaggggctcaaggggcttcaggagatcctggtttt
attgggcctcgaggcatcaaaggtttcccgggcatcccaggacaagaggggcaccacgga
aaaccaggacaacccagttataaaaagggtgcacaaggacactctggacctcagggactg
cctggactgaagggaatgccaggctttacaggacccccaggaattagaggattccctgga
gggactggacccaggggggaaaaaggttcatctggtgcttatggagcaacaggagttcat
ggaaccgatggagataatggtgaaacgggtgacattataaacctccctggactcacagga
acaagaggccaaagtgggcagtctggaccttcaggtcaaactggttttccaggtgagact
gggaatagaggaagtcctggctttgatggcatcaaaggaatgaaaggcattctaggtgaa
cctgggaaagaagggccatcaggtgctaaaggtctacacggcttcccaggaaaccagggt
actaagggctggtcaggtgagccaggacggccaggaactcctggtaaagcaggtcatcct
gggcaaaaaggttttcctggtgctggagggatttttgggttggatggtcttaaaggtcaa
aaaggtcttcaaggtgttccaggtgccaacaactggggattacctggtgttcctggaaca
aaaggagaaatcggagatacaggtactcccaacacagaagatggtctccctggaaatact
ggccataaaggttcagcaggagatccaggtgatcagggtgaaccaggtccttcaggtatt
caggggcctacaggagacccgggatttcctggcagaaagggtattacaggggacacaggg
ccacgtggccataaaggttttccaggctatcctggagccactggcctcccaggctttcca
tctccatttggacctaagggagatcgaggtgctcagggacagtttggtattctaggacta
aaaggaattcatggggacgctggagagaaaggatcacctggacagcctggagtatcagga
aagaaaggtgtaagtggagatcaaggcatgatgggaatcccaggtcaacgtggattgcaa
ggtgatagaggtttttctggacctaaaggagaaactggaacaccaggctatcctggtgct
cctggtgctatgggactccctccggttcctgtaaagataccaggggagagagggccctct
ggtccatttggaatcatcggaccaaggggagtgcaagggaagataggtcctgaaggaccc
cctggagatcaagggtttgtgggaccaaaggggcaaattgggatgccaggatttcctgga
attcctggaaacccaggtatacgtggggaagctggacagatgggccacccaggtcttcag
ggtgaagagggataccatgggcggcctggtactccaggtcctaagggtatgcctgggcgc
agtgttagcgttggatacctgttggtgaagcacagtcaatctgatcagacacccatgtgc
ccagtgggaatgtcaaagctgtgggatggctacagcttgctttactttgaaggacaagag
aaagcacataatcaagacttgggtctagcaggctcttgtcttcctcgatttaacaccatg
ccattcttgtattgcaatcctggcgatatatgctactatgctagtcgcaatgacaagtcc
tattggctcgccacaaccgcccccattcccatgatgccagtggaggagttcgaaatcaag
ccttacatcagccgctgttcagtatgcgaggctccgactgtggccatagctgttcatagt
caggatacaacaatccctcaatgcccagcaggctggaggagcttatggattggctattcc
ttcctcatgcacacggcagcgggagacgagggaggtggacagtctctggtgtctccaggc
tcgtgtctggaagacttccgcacaactcccttcattgaatgcaatggagccaaggggacc
tgtcactacttcgctaacaagcacagcttctggctgacgtccatcgacgagtccttccag
acttcccctgcatccgagactctcaaagctggccagcacctgtcacgcatcagtcgctgc
caggtttgcatgaagaacctgtga
DBGET
integrated database retrieval system
