Trichomycterus rosablanca: 134324953
Help
Entry
134324953 CDS
T09921
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
trn04121
]
134324953 (shprh)
Enzymes [BR:
trn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134324953 (shprh)
Ubiquitin system [BR:
trn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134324953 (shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
PHD
zf-RING_2
zf-C3HC4_3
zf-RING_5
TPR_10
TPR_12
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
134324953
NCBI-ProteinID:
XP_062862969
LinkDB
All DBs
Position
13:complement(22094192..22111025)
Genome browser
AA seq
1648 aa
AA seq
DB search
MSSRRKRVAPVRMDDEDKKKLDWNMHDHRRTEGEFEADESFLETSLSISCQPDPVLDVTS
GTVAGHSFEEPGSSMLDSPEIIELTVMPVCALVLSWKALIGEFNLHPKVPMELTDVNFCL
QQTQNALLIIPATTTSDQPTKYPTECSLGGLSLEDLDWLQKRKIIQLCHLSGDGAVKLKF
FLLESGLGRPEFLSEGNGRIRRTNQLMQKLMELFYDFIIPEIMENEEEECDTDLERQNVE
ELYDYVRHHQRKEQEQMFDVQHPALIPVLRLYQSQAVNWMLRKERYRNEAPQDQRLHFLW
REVISMCGKKLFYNPYTGCIIREFPLAGVDWPGGILADEMGLGKTVEVLALILCHTRQGL
KQSALTLPVGQSVNYYIPPPPLERQRTKQCDPKPREKISYPAVRVMLLTAISEMKVGKGA
SINAMFTYLRTMYKYDPLKNRNHIKKMLTKLIGEGLVEQVKGRGLAGSFKLGRNYKEKKK
KPPSPHKSPGEAAPRRTSRRCAGQERDSIMNPSNISSDSEDTLSTMDPPVLTVESKHDHE
LLAEPKELNNKPSIDINPDNYQPQIPTDEAKKEPSECNEINAKLQPPQCDDSIQLESQAD
ITQDLQIEPSPPTRASVVPFNTPDYRFECICGELGLVDYKARVQCMNCLLWQHAECVNYK
EENLSTTPFYCPHCLVAMTPVPTGATLIISPSSICHQWVEEINHHIRSASLRVLVYQGVK
RHGFIQPHVLAEQDVVITTYDVLRTELNYVDLPHSNSKDGRRFRNQKRYMAVPSPLVAVE
WWRVCLDEAQMVECTTAKAAEMALRITSINRWCVSGTPVQRGLEDLYGLVLFLGVDPYWV
KYWWDQLLYRPYRRGNTGPLYNLIGQQIWRSAKKDVIDQIQIPPQTDEIHWLNFSPVEGH
FYHRQHEVCSQDALHKLRKISDWSLKLGSLDRRTVNTILYPLLRLRQACCHPQAVRGEFL
PFQKSTMTMEELLKSLQKKCRVECEEAHRQLVCALNGLAGIHIIRGEFVEAAEMYREVLR
SSEEHKNQLKTDSLQRLHATHNLMELLNAKHPGIPPTLRDDRLKEEAEQLKQHYMTKVSS
EVSEAQQNLLPVLQNIKELKRKVNLRAPWWLDVVQQSIQYSMDDDLVTRIHNELTCSYKQ
QANKLSMADKFRDARGLQFLLSTQMDELMKSQKTVEDAVKKLEAQPSQEVIEESTACHLR
PVRLPLNNCVFCKADELFTDYESKLFSHTVKGQTAIFEDMIEDEEGLMDDRLPTTSRGLR
AASETERTLKAILSFAKIRRLDSELIEEGNTFMELFEFWKKEYKVLHEYWMTLRDRVSAI
DELGMATERLRVRLPDEPKPKVLHIIEPHEVEQNRVKLLNDRAVAKSQLQKKLGQFLYLT
NLEKSQDKSTGGLNPEPCPICARSLGQEWAVLTCGHCFCNECISIIVEQYSVGNRKKAIK
CAICRQTTSHTEISYVFTTQAADQGQEIPVKGSHSTKVEAVVRALKKIQMTDPGAKSLVF
STWQGVLDIIAKALLDNNLEFSQINGIHKFQENLSSFKYEEKINILLLPLHTGSNGLNII
EATHVLLVEPILNPAHELQAIGRVHRIGQTKPTFVHRFLIKSTIEERMQAMLKTAEKSHS
ATAMKHAEASVFTVADLAELFTEDTDTL
NT seq
4947 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagaaggaaacgtgtggcacctgtccgcatggacgacgaggacaaaaagaaa
ttggactggaacatgcatgatcaccgaaggactgagggtgagtttgaagctgatgaaagt
ttcttagagacatcactttctatcagctgccaacctgaccctgttctggacgtcacaagt
ggaactgtggctggccattcctttgaggagccaggaagctctatgctggactcaccagaa
attattgagcttactgtgatgccagtgtgtgctttggtgcttagctggaaggcactgatt
ggagagtttaacctccatccaaaggtccccatggagcttacagacgtaaatttttgcctg
cagcagactcagaatgcactgttaataattccagccaccacaacatcagatcaacctaca
aagtatcctactgagtgctcgttaggtggattatcactggaggacttggactggctgcaa
aagaggaagatcatacagctctgtcacttgtcaggagatggtgcagtaaagttgaaattt
tttcttttagaatctgggttgggacgaccagaatttctcagtgaaggaaatggacgcata
agaagaactaatcagctgatgcagaaattgatggaattgttctatgatttcataattcct
gagatcatggaaaatgaagaggaagagtgtgacactgatctagaacggcaaaacgtggag
gagctctatgactacgtcagacaccatcagagaaaagaacaggaacagatgtttgatgta
cagcatccagccctcatcccagtgcttcgactctaccagagtcaagctgttaactggatg
ttgaggaaagagaggtacaggaatgaagctccccaagatcaaagactacattttctttgg
agggaggtgatttcaatgtgtggaaagaagttgttttataacccctacacaggctgtata
attcgggagtttcctctggctggagttgactggcctggaggaattcttgcagatgaaatg
gggttgggtaaaactgtggaggtgctggcccttattttatgccatacccgccaaggcctg
aagcagagtgctcttactttacctgtgggacaatcagtaaactattacattcctcctcct
ccattagagaggcaaaggaccaagcaatgtgacccaaagccaagagagaaaatttcctat
cctgctgtccgtgtgatgcttctgactgccattagtgaaatgaaggttgggaaaggagcg
tcaatcaatgccatgttcacatacctgcggactatgtataagtacgaccctctgaagaac
cgcaaccacataaagaaaatgctaacaaagctcataggcgaaggtttggtggaacaagtt
aaaggccgtggcttagctggatcattcaagctgggacggaactacaaagaaaagaagaag
aaacctcctagccctcacaagtcacctggagaggctgctcccaggagaacatcccgcaga
tgtgcaggccaggagcgagactccataatgaacccatccaacatatcctctgactctgaa
gacacactaagcaccatggatcctcctgtactcacagtggaatcaaagcatgaccatgaa
ctgctagcagagccgaaagagcttaataacaaaccaagcatagacattaatccagacaac
taccagcctcagattccaacagatgaagctaagaaagagccatcagaatgtaatgagatc
aacgctaaactacagccaccgcagtgtgatgatagtatccagttagaaagtcaagccgat
attacccaagatcttcagatagagccttcacctccaactcgagcatccgtggttcccttt
aatacccctgattaccgctttgaatgtatatgtggagaactgggcctagtagactataaa
gctcgggtgcagtgcatgaattgcctgttgtggcagcacgcggagtgtgtaaactataag
gaagagaacttgtcgaccacgccattctactgcccacattgcctggtggccatgacacct
gttcctactggtgccactctcatcatttcacctagttccatctgccatcagtgggttgag
gagattaaccaccatattcgctctgcctcacttcgagttctggtgtaccagggtgtgaaa
aggcatggattcattcagcctcatgtcctggctgaacaggatgtagtcatcactacttat
gatgtactacgtactgagctgaactatgtagaccttcctcacagtaacagcaaagatgga
cgacgcttccgcaaccagaaacgctacatggctgttccaagcccacttgtagctgtggag
tggtggcgcgtctgtctggatgaggctcagatggtggagtgcaccacagccaaggctgca
gagatggctttgcgaatcacatccattaatcgctggtgtgtaagtggaactcctgtgcaa
agaggtcttgaagacttgtatggtcttgtcctttttctgggagttgacccatactgggta
aagtactggtgggatcagctgctctatagaccttatcgtcgtggaaacacaggcccactc
tacaatctcattggccagcagatctggagatctgccaaaaaagatgttattgaccagatc
cagattcctccccagacagatgagattcactggctgaacttctctccagtagagggtcac
ttttaccaccgccagcatgaggtctgctcccaggatgcattgcacaagctgagaaagatt
tcagactggtcactgaagttaggcagcctggacagacgcacagtgaacaccattttgtac
ccactgctgcgtctgcgacaggcctgttgccaccctcaggctgtcaggggagagtttttg
ccttttcagaagagtacaatgacgatggaagagcttctcaagtcactgcagaaaaaatgt
cgtgttgagtgtgaggaggctcacaggcagctggtgtgtgctcttaatggtttggcagga
atccacatcattagaggtgagtttgttgaggcagcagagatgtacagagaagtgcttcga
tcatcagaagaacacaaaaatcagcttaaaacagactctctgcagagacttcatgctacc
cacaacttaatggagctgcttaatgcaaagcatcctggtataccccctactctccgagat
gaccggctgaaagaggaggcagagcagttaaaacagcactacatgacgaaggtcagctct
gaagtgtctgaggcgcagcagaatctcctgcctgtccttcaaaacatcaaagagcttaag
cgcaaagttaacctgcgcgccccctggtggttggacgtcgtccagcagtccattcagtac
tctatggatgatgacctggtcacccggatccacaacgagcttacctgcagctacaaacag
caagccaataaactctcaatggcagacaaatttcgggatgctcgaggtcttcagttttta
cttagcactcagatggatgaactgatgaagtcccagaaaactgttgaggatgctgtgaaa
aagctggaagctcagccttcacaggaagtcattgaggagtcaactgcttgtcacttaagg
cctgtccgcctcccacttaacaactgtgtgttttgcaaagctgatgaactgttcacggat
tatgagtcaaagctattctctcacacagttaaaggccagacagccattttcgaggacatg
attgaggatgaggaagggctaatggatgacagacttcccaccactagtcgtggcctgagg
gcagccagtgagacagaacggaccctgaaagccattttgtcctttgccaaaatccgccgc
ctggattctgaacttatagaggagggtaacacatttatggagctctttgagttctggaaa
aaggagtacaaggtgctgcacgagtactggatgacattaagagatcgtgtatcagctata
gatgagctgggtatggctacagaaaggctgcgtgtgcgtcttcctgatgagcccaaacct
aaagttctgcacatcatagaaccacatgaggtagagcagaacagagtaaagctgttgaat
gacagagctgtggctaaatctcagctacagaaaaagcttggacagtttctgtatctcacc
aatctagagaagtcccaggataaatccacaggaggtctgaatccggaaccatgtcccatc
tgtgcccgctccctgggtcaagaatgggccgtgctcacctgtggacactgtttctgcaat
gagtgcatttccatcattgtggagcaatacagtgttggaaatcgtaagaaagctatcaag
tgtgccatctgcagacaaaccacttcccacactgaaatttcctacgtcttcaccactcaa
gctgcagatcagggacaagagattcctgtcaaaggaagccactccactaaagtagaggct
gtggtcagagccctcaagaaaatccagatgactgacccaggagctaaatccctcgtgttt
tccacgtggcagggagtgctggacatcattgcaaaagcactcttagataacaacctggag
ttctcacaaatcaatggcattcacaagtttcaggaaaaccttagttctttcaaatatgag
gagaagatcaacatcctgctgttgccattgcacacaggctcaaatggactgaatatcata
gaagctacccatgtgctgcttgtggagcccattcttaacccagcacatgaactgcaggcc
attggtagagtgcaccgcattggccagacaaaacccacatttgtgcaccggtttctcatt
aagtctacaattgaggagcgcatgcaggccatgctgaaaacagcagagaaaagtcacagt
gccacagccatgaagcatgctgaggcctctgtgtttacagtagcagacctggctgagctc
ttcactgaggacactgacacactctag
DBGET
integrated database retrieval system
