Trichomycterus rosablanca: 134325794
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Entry
134325794 CDS
T09921
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134325794 (scaf8)
03041 Spliceosome [BR:
trn03041
]
134325794 (scaf8)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134325794 (scaf8)
Spliceosome [BR:
trn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
134325794 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
PRP38_assoc
RRM_PARP14_3
RRM_occluded
DUF3525
Motif
Other DBs
NCBI-GeneID:
134325794
NCBI-ProteinID:
XP_062864101
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All DBs
Position
13:complement(32267675..32312111)
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AA seq
1277 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFVQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIIATFLNLYRCPSDDKSKIVRVLNLWQKN
NVFKSDIIQPLLDMAAGLPPPSVTPVTASTALPVNNATPGTPATPATPANMVPSLPDWAS
QISNSDTVAAVAQILQSPQGQQLQQLVQSLQLQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAANTLNPLEQRVSAFNKKLLGQFDFGSESEPSEDSKKDTSQLPLVSESLNTSLFHQL
AEQLQQQNLEQFQKQILEHQQQQKALESQDKIFGSENLASSAQSNVHPKLPEQECKLDDS
IDNQQEDMELDEGQDTVDEEIFESEKKTNDARSRTRSRSRSRSPKRRRSRSRSGSRKRKH
RKRSRSRSRDRKRKSSRSYSGERRAREREKDRQKKGLPPIRSRVLSVCSTTLWVGQVDKK
ATQQDLTNLFEEFGQVESINMIPPRGCAYICMMHRQDAYRARQKLSNGSYKIGSKVIKIA
WALNKGVKQEYKQFWDADLGVTYIPWEKVKLDDLDGFAEGGIIDQETVDSEWEAQKNTEA
AKETPVQPAATETTTVSTSQSETFTQPVAMMPVQIPVAQTVSAMGLVPPTFPVTMAMPPP
GFGPPPPFLRAGFNAAQPPPGFMTTPGVAQSAVAAGLASAQTNLVQASMSGTQDTNKDST
FGGIIPQTSTISAGFMSSAMPGAGVFNAVAGQPQQANTDKTSSAERLEAANEITLQGMQN
AVRSGMGLLGMHPSASLTHPLAAQRMPGLVPLDLRPNLLQGAGARFPMFMQQGLAQQTNS
LLDASLQAQARVRTPFSQMEHFNRTEGAFARIPNPLPAGTGNQDKANTETPASSNGGEQQ
EKDQDYRFPPPEKPSTGLLKTPPQEMRNEHTPVRPPLLDRPPRVGMQVDGSGRRDSVPGP
FRGESRWGVSRGDLDERDTRGMPTGAPKGFQDDRPNPNFQNRFALGGAGSPWNRGVGGGG
APFNANIHQDFDDRRRPWERQKDRDDRDFHREMNDSRHTRDRDREWERERERDRDRARDR
NRERERDRDRDRDRDSEKDQNRDRERSSGWTPLNSQSQPLLPLPKPSSQPLLPLPTPLLN
LPQVKPESQPKPHLKQEPEQESKSLELQHQPRRVEPQPEVKPLLQPQPPSPMVPMENAGI
QERTEATDCKPEMSLIQLKPDPATEPLQIPSSAPTAAPPKSPERSAPTTPASSSGETGLK
AEAETEPELVKTDTEES
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgttaaagcgtttaatggcgagctgtactctctgaatgaatacaagcctcct
atctccaaagcaaagatgacccagatcaccaagtcagcaattaaagccataaagttttac
aaacatgtggtccagagtgtggagaaattcgttcagaagtgcaaacctgagtacaaagtc
cctggtctgtacgtcatcgattcaatcgtccgtcagtctcggcaccagtttggccaggaa
aaggacgtgtttgcaccacgctttagcaagaacattattgccacctttctaaatctctac
cgatgcccctctgatgacaagagcaaaattgtccgtgtcctcaatctatggcagaagaac
aatgtgtttaaaagcgatatcatccagcctctcttggatatggcagcagggctaccacca
ccaagtgtcacgccagttaccgcctccactgctctgccggttaacaatgccactcctgga
actccagcaacgcctgccaccccagccaacatggtgcccagtttaccagactgggcctct
cagatttccaactcggacacagtggcggctgtagcacagattttacaaagccctcaaggg
cagcagttgcagcagctggttcagagtctgcagttacagcagcagaaacctcagccgtct
cttcttcaggctctggatgccggtctggtggtccagcttcaggctctgaccgctcagctc
accgctgctgcagccaacacactcaacccacttgagcaaagggtttctgcctttaataag
aaacttttgggacagtttgattttggcagcgagtcagaacccagtgaagattctaaaaag
gacacatctcaactgcccttggtttctgagtcccttaatacttcactgttccaccagttg
gctgagcagctacagcagcagaaccttgaacaatttcagaaacaaattctggagcaccag
cagcagcaaaaggccttggagagtcaggataaaatatttggctctgagaacttggcttct
tcagcacagagcaatgtacatccaaagctcccagagcaggaatgtaaactggatgactcc
attgataaccaacaagaggacatggagcttgacgagggacaagacacagtggacgaggag
atctttgagtctgagaagaagactaatgatgctcgttcaagaacacgctcaagatctcgc
tccaggtcccccaagagaagacggtccaggtcacgctcaggatctcggaagaggaagcac
agaaagcgttctcgctcacgatctagggaccggaagaggaagtcttctcgatcgtactct
ggtgaacgacgagcacgggagagggaaaaggacaggcaaaagaaaggtcttccacccatt
cgttctagggttctcagtgtttgtagcactacgttgtgggtgggccaggtggacaagaag
gccacccagcaagaccttaccaacctttttgaagagtttggccaggttgaatcaatcaat
atgattcctccaagaggctgtgcctacatctgcatgatgcaccggcaggatgcgtatcgt
gctcgacagaaattaagcaacggctcttataaaattggctccaaggttatcaagattgcc
tgggctttgaacaagggtgtaaaacaagagtacaagcagttctgggatgcggaccttggc
gtgacctatatcccctgggagaaagtcaaactggatgatcttgacggctttgctgaagga
ggcattatagaccaggaaactgtagacagtgaatgggaggctcagaagaacacggaggca
gcaaaggaaaccccagttcagcctgcagcaaccgagaccactacagtcagcacctcacaa
agcgagaccttcacacagcctgttgccatgatgcctgtgcagattccagtggcacagacg
gtctctgccatgggcttggtaccacccacctttcctgtcaccatggctatgccgccacca
ggctttggtcctccacctccttttctaagagctggattcaacgctgcacagcctccacca
ggttttatgaccactcctggggtcgctcagtcagccgttgcagcgggcctcgcctctgca
cagacgaatctggtgcaggcttcaatgtccggtactcaagacaccaacaaggactctaca
tttggaggaataattcctcagaccagtactatttctgcaggcttcatgtcctcagcaatg
cctggagctggagtcttcaacgctgtggcaggacaaccccagcaggccaacacagacaag
acttcatctgcagagagattagaagcagctaatgaaataacactacagggaatgcagaat
gcagtgcgtagtggaatgggtttactgggcatgcacccctctgcttctttgactcaccct
ctcgctgcccagaggatgcccggtctggtacctcttgacctgcggcccaacctgcttcag
ggagccggagcacgtttccccatgttcatgcagcaaggactggctcagcagaccaacagc
ctcctggatgcctcacttcaagcccaggctcgtgttcgaacaccattctctcagatggag
catttcaaccgtactgaaggagcctttgcaagaattcccaaccccttacctgctggaaca
ggaaaccaggacaaagcaaacactgagacaccagccagttccaacggtggagagcaacaa
gagaaagatcaggactatcgcttcccacctcctgagaaaccgagcacagggctgctgaag
accccccctcaagagatgcgtaatgaacatacacctgtcagacccccgttgctggataga
ccccccagagtaggcatgcaggtggatggatctgggagaagggattctgtgcctggtcct
tttagaggggagagtcggtggggtgtatcacgaggggacttggacgagagagacacgaga
gggatgcctacaggagccccaaagggctttcaggatgatcggccaaatcctaatttccag
aatcgctttgctttgggtggagctgggtctccctggaatcgaggagtagggggaggaggt
gccccattcaatgctaacattcaccaggactttgacgaccggcgtcgtccctgggagagg
cagaaagaccgagatgaccgtgacttccatcgagaaatgaacgacagccggcacacccgt
gacagggacagggagtgggagcgagaaagggaacgagaccgtgaccgtgcaagagatcgg
aatcgggagcgagagagggaccgcgatcgagatcgagatcgggatagcgagaaagatcag
aacagagacagggagcgctccagtggctggacacccctcaattcacaatctcagcccctt
cttcctctacccaagccatcatcacagccgctgcttcctctaccaacccccctgctgaac
ctgcctcaagttaagcccgagtcccagcctaaaccacatctaaagcaggaaccagagcag
gaatcaaaaagccttgagctgcagcatcagccaagacgagtcgaaccacagccagaagta
aaaccccttctgcagcctcagcccccctcacccatggtcccaatggagaacgcaggtatc
caagagcgaacggaagccactgactgcaagcctgaaatgagcctgatccagctcaaacca
gaccctgcaaccgagcctcttcaaatcccctcttctgctcccacagcagctcccccaaaa
tcaccagaaaggtccgctcccacgactccggcttcaagcagtggagagactgggctgaag
gcagaagcagagactgagcctgagctagtgaaaacagacactgaagaatcatag
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