Trichomycterus rosablanca: 134326054
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Entry
134326054 CDS
T09921
Symbol
abca1a
Name
(RefSeq) phospholipid-transporting ATPase ABCA1a isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn02010
ABC transporters
trn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
134326054 (abca1a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
134326054 (abca1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
trn02000
]
134326054 (abca1a)
Transporters [BR:
trn02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
134326054 (abca1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
134326054
NCBI-ProteinID:
XP_062864328
LinkDB
All DBs
Position
14:complement(2937229..2993824)
Genome browser
AA seq
2270 aa
AA seq
DB search
MAVSTQLSLLLWKNFTYRRRQTIQLLIEIIWPLFIFFILISVRLHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGAVANFNDSIISRLFTDVKKIMVYSQNDR
SLEGYRGLVRALRKLQSSTEGFKLKDFLRDDETLSEFLKHNATLSPHAVQQIVNADLNLE
KVLMKGFGVHLKDLCNTTLLEDFVTIVDPDVSQLVRRIICQSSSDWLNSAEANFLSNLDF
LKPIRKDVRSDPKVQDVSLATERLLESLGSLTVELVGMKSWRDMRTEILYLTGNATHSPN
HVYQAVSRIVCGHPEGGGLKIKSLNWYEDSNYKALFGNHNDSEGEPASVYDNTSTPYCNN
MMKTLESSPISRMIWRALKPLLMGKILYTPDTPATRKIIHEVNQTFQELGVLRDLGGMWE
EMRVKVWDFMENSEEMDLVRTLLQNNASAQVLNAKLKGTEWQVEDISRFLSKASEDTRAP
GTAYTWREVFNETDQAILTISRFMECVNLDKLEPVANEERLVNKSMNLLDHQKFWAGIVF
PDMQADSSQLPTDVSYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYVWGGFSYLQD
VIEQGIIRALTGSKERTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIIIKG
IVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAALLVLILKMGNLLPYSDPGVV
YLFLVSFAIVTIMQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAKVV
VSLLSPVAFGFGCEYFALFEEQGVGIQWDNLLSSPMQEDSYSLTTSISLMMFDAFLYAVM
TWYIEAVFPGQYGIPRPWYFPFTKSYWCGEKCGWTAASSSNNRENTEAVCMEEVPADLEP
GVYIENLVKVYRHGNKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTA
YIMGKDIRTDLSAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKSEMNQIVA
DLGLPHKRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY
RQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFDLS
LSSCRNSSSTVSCSKNSLKKDDSVSESSSDAGLGSDHESDTTTIDVSLISNVIFKHVPTA
RLVEDLGHELTYVLPYEAAKDGAFVELFHEVDDRLIDLGISSYGISDTTLEEIFLKVAND
NGVDAETSDGTILTLRRHRRHAFGDHQSCLKPFREDDNLDSNDSEGDPESRETDWLGGSD
GKGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFG
KYPSLELEPSMYEEQFTFISNDAPEDSHTNKLLGALTDARVFGESCVQDDGSGRDGPCPI
RDDEWELPEVSSSVLDMFQTGNWSMENPSPLCECSCERKKKMLPECPAGAGGLPPPQVKI
SSSNTLQNLTGRNISDYLVKTYAQIIGKSLKNKLWVNEFRYGGFSLGAKGSLELSSTDEI
SDAITNMRRRFDLEQGTATDRFLRCLSSFISSLDTKNNVKIWFNNKGWHSIASFLNVMNN
GILRSSLPAGLNPAKYAIKAFNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPAS
FVVFLIQERVNKAKHMQFISGVQPFLYWLANFVWDMCNYIVPATLVIIIFICFQQEAYVS
STNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELF
GNNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFKSPLAWDMVGK
NLFAMAVEGVVFFCITILIQYRFCLKSRGFSARLKPITEEDEDVARERQRIVGGGGHSDI
LELRELTKVYKRKQKPAVDRLCVGIPRGECFGLLGVNGAGKTSTFKMLTGDSLITSGEAY
LAGRSVLTEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILHGVPEKEVCEVAEWGIRK
LGLIKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRALWNCILSII
KEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVGGGEPR
LEPVIELIEHELPGSMLKEKHRNMLQYQLPSSLSSLARIFSILSRNKEQLHIEDYSVSQT
TLDQVFVNFAKDQSDEDHFKDISINRNDAVVDLSQLDTFLTDKKAKETIL
NT seq
6813 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctccactcagctgagtttgctgctgtggaagaacttcacatacagacggaga
cagaccatccagctgctgatcgagatcatctggcctctgttcatcttttttattttaata
tcagtgcgactgcattatcctccctacgagcaacatgaatgccactttcccaacaaggca
atgccctcggccgggactctgccctgggtacaaggtatcatctgcaacgccaacaacccc
tgcttccgctaccccactcctggagaggcgcccggtgcggtggccaactttaacgactcc
ataatctcccgtctgttcacggatgtcaagaagattatggtctacagccagaacgacagg
agcctggagggctacagggggctggtacgagccctgcgcaaactgcagagcagcacagag
ggcttcaagctgaaggatttcctccgtgacgacgaaactctgtccgagttcctgaagcac
aacgccacgctgagtccacacgccgtccagcaaatagtgaacgccgacctcaacctggag
aaggtgctgatgaaagggttcggagtgcacctgaaggatctgtgcaacaccacgctgctg
gaggactttgtgaccatcgtcgatccagatgtgtctcagctggtccggagaatcatttgc
cagtcgtcctcagactggctcaacagtgcagaggccaacttcctgtccaacctggacttc
ttgaagcccatacggaaggacgtcagatccgacccaaaagtccaggacgtatctttggcc
acggaaaggcttctggagagtctgggctcgctgaccgtagagctggtgggcatgaagagt
tggcgcgacatgcggacggagatcctgtacctgacgggcaacgccacccactcgcccaac
cacgtgtaccaggccgtgtcccgcatcgtgtgcggccaccccgagggcggcggcctcaag
atcaagtcgctcaactggtacgaggacagcaactacaaggctctgttcggcaaccacaac
gactcggagggcgagccggcgtccgtctacgataacacgtccactccgtactgcaacaac
atgatgaagacgctggagtcgagtcccatctcgcgtatgatctggagagccctgaagccc
ctgctcatgggaaagatcttatacacgccggacacgcccgccacacgcaaaatcatccat
gaggtgaaccagacgtttcaggagctgggggtgctgcgggatttaggaggaatgtgggag
gagatgagggtgaaagtttgggattttatggagaacagtgaagaaatggacctggtcagg
actttgcttcagaataacgccagcgctcaggtcctcaatgccaagctgaagggcacagaa
tggcaggtggaagacatttctaggttcttgtccaaagcctcggaggacacgcgcgccccg
ggtacggcgtacacctggagagaggtgttcaacgagaccgaccaggccatcctcaccatc
tctcgcttcatggagtgcgtgaacctggataagttggagccggtggccaacgaggagcgc
ctggtgaataaatccatgaacctgctggaccatcagaagttctgggccggcatcgtgttc
ccggacatgcaggccgactcgtcccagctccccaccgacgtcagctacaagatccgcatg
gacatcgacaacgtcgagcgcaccaacaaaatcaaggacgggtactgggaccctggtcct
cgcgccgacccgtttgaggatctgcgctacgtgtggggtggattttcttacctgcaggac
gtcatcgaacaaggaatcatcagggcgctcacgggcagcaaggagaggaccggagtctac
atccagcagatgccctacccgtgctacgtggatgacatcttcctgcgcgtgatgagtcgc
tcgatgcccctcttcatgacgctggcctggatgtactcggtggccatcatcatcaaaggc
atcgtctacgagaaggaggcgcggctcaaggagaccatgaggattatgggactggacaac
gggattctgtggctgagctggttcatcagcagcctgatcccactgctcatcagcgccgcc
ctgctggttctcattctcaagatgggaaacctgctgccctacagcgacccaggcgtggtc
tacctgttcttggtctccttcgccatagtcactatcatgcagtgcttcctcatcagcacc
atcttctctcgcgccaacctggcggccgcgtgcgggggcatcatctacttcaccctctac
ctgccctacgtgctgtgcgtagcctggcaggactacgtcggcttcggcgccaaagtggtc
gtgagcctcctgtcgccggtggcgttcgggttcggctgcgagtacttcgctctgttcgag
gagcagggagtgggcatccagtgggacaacctgctgtccagtcccatgcaggaggacagc
tacagcctgaccacctccatctccctgatgatgttcgacgcttttctttacgccgtcatg
acctggtacatcgaggccgtcttcccgggacaatacggaatcccgcggccgtggtacttc
cccttcaccaagtcgtactggtgcggagagaagtgcggctggactgctgcgtcatcctcc
aacaacagggagaacacagaagcggtgtgtatggaggaggtcccggccgatctggagccc
ggcgtctacatcgagaacctggtgaaggtttacagacacgggaacaagctggcggtcgac
ggtctgactctgggcttctacgaggggcagatcacctccttcctggggcacaacggagct
ggaaagacgaccaccatgtccatcctgaccggtctgttccctcctacatcgggcactgcc
tacatcatgggtaaagacatccggaccgatctgagcgccatccgtcagaacctgggcgtg
tgtccccagcacaacgtcctctttagcatgctgacggtggaggagcacatctggttctac
gcccgtctcaaaggtctgtcggaggagaaggtgaagtctgagatgaatcagatagtcgcc
gacctgggcctgcctcacaaacgcaagtcccgcaccagtcagctctccggtgggatgcag
aggaagctgtccgtggcgctggcgttcgtcgggggttcgaaggtcgtgatcttggacgag
cccacggccggggtcgacccgtacgcccgccggggcatctgggacctcctgctcaagtat
cgccaaggtcggaccatcatcctgtccacccaccacatggacgaggcggacatcctgggc
gaccggatcgccatcatctcgcacggtaagctgtgctgcgtgggttcctcgctgttcctg
aagacccagctgggcaccggctactacctcaccctggtcaagagggacttcgacctttcc
ctcagctcctgccgcaactccagcagcaccgtgtcctgctccaagaacagcctcaagaag
gacgacagcgtgtctgagagcagctctgacgctggactcggtagtgaccatgaaagtgac
accaccactattgacgtctctctgatctccaacgtgatcttcaagcacgtccccacagcc
cggctggtggaggacctgggccacgagctcacctacgtcctgccgtacgaagccgccaag
gacggagcgttcgtggagctgtttcacgaggtggacgaccggctgatagacctcgggatc
tccagctacggcatctcggacaccacgctggaggagatcttcctgaaagtcgccaacgac
aacggcgtcgacgcagaaacctcagacggaaccatcctgaccctgaggaggcaccgcagg
cacgcgttcggcgaccaccagagctgcctcaaacccttcagagaggacgataacctcgat
tccaacgactcagaaggtgatccagaatctcgtgaaacggactggttgggaggttcggat
ggtaaaggctcgtaccaggttaaaggctggagtctgaagaggcagcagttcgtggctctg
ctctggaaacgcttcctctacgcccgacgctcacgcaaaggtttcttcgcccagatcgtt
cttcccgccgtgttcgtgtgcatcgctctggtcttcagtctgatcgtgccaccgtttggg
aagtacccgagtctggagctggagcccagcatgtacgaggagcagttcaccttcatcagt
aacgacgcccccgaagattctcacaccaacaagctgctcggagctttaactgatgctcgg
gtcttcggtgagagctgcgtgcaggacgacgggtcaggcagagacggtccgtgtccgatc
agagacgacgagtgggagcttcctgaagtgtccagctcggtattggacatgtttcagaca
ggaaactggagcatggagaacccgtcgcccctctgcgagtgcagctgtgagcgtaagaag
aaaatgctgccggagtgtccggccggggccgggggtctgccaccgccacaggttaaaatc
agcagctcgaacacgctgcagaatctgacgggtagaaacatctcagattacctggtaaaa
acgtacgcgcagatcatcgggaaaagtctgaaaaataaactctgggtgaatgaattcagg
tacggtggattctcactgggagcgaaaggttcactggaactttcctccactgatgagatc
tctgacgccatcactaacatgaggagacggtttgatctggaacaaggaactgcaaccgac
aggtttctgagatgcttatcgagttttattagcagcctggacaccaagaacaacgtcaag
atctggttcaataacaaaggctggcacagcatcgcatctttcctcaacgtgatgaacaac
ggcatcctgcgttccagtctgcccgccggcctgaaccccgccaagtatgccatcaaggct
ttcaatcacccgctcaacctcaccaaggagcagctttcccaggtggccctgatgaccacc
tccgtggacgttctggtgtccatctgcgtcatcttcgccatgtccttcgtcccggccagt
ttcgtggtgttcctgatccaggagagagtgaacaaagccaagcacatgcagttcatcagc
ggggttcagcccttcctctactggctcgccaacttcgtctgggacatgtgtaactacatc
gtccccgcgaccctggtcatcatcatcttcatctgcttccagcaggaggcctacgtctcc
tccaccaacctgcccgtcctggcgctgctactgctgctctacgggtggtccatcaccccc
ctgatgtacccggcgtcgttcttcttcaagatccccagcacggcctacgtggtcctgacc
agcgtcaacatcctgatcgggatcaacggcagcgtgtccacgtttgtgctggagctgttc
gggaacaacgagatcggcgggatcaatgacatcctgaagaacgtgttcctgatcttccct
cacttctgcctgggccggggactcatagacatggtgaagaaccaggccatggccgacgcg
ctggagagattcggtgagaatcggttcaaatcccctctggcgtgggacatggtgggcaag
aacctgtttgctatggctgtggagggcgtggtcttcttctgcatcaccatacttatacag
tatcgcttctgcctcaagtccagagggttcagcgcccgcctgaagccgatcaccgaagag
gacgaggacgtggcccgagagaggcagaggattgtgggcggaggtggacacagtgacatc
ctggagctccgagagctgactaaagtgtacaagaggaagcagaagccggccgtggacagg
ctgtgtgtgggaattccacgcggagagtgtttcggcttgctcggtgtgaacggcgccgga
aaaacgagtacgttcaagatgctgactggcgattcgctcatcacaagcggagaagcttat
ctagctggcaggagcgtgctgacggagattgacgaggtgcatcagaacatgggttactgc
cctcagttcgacgccatcaacgacctgctgaccggccgcgagcacctggaattttacgcc
atcctgcacggcgttcctgaaaaagaagtctgtgaggtagccgagtgggggatccgtaaa
ctggggttgattaaatatgtggacaaagctgcaggaagctacagcggaggaaacatgcgc
aagctctccaccgccatggctctcatcggcgggccgcccgtcgtctttctggatgaaccc
accacgggcatggaccccaaagctcggagggcgctgtggaactgcatcctcagcattatt
aaggaggggcgctccgtcgtcctcacgtcacacagtatggaggagtgtgaggctctgtgc
actcgtatggccattatggtgaacggcaggttccgctgcctgggcagcgttcagcatctg
aagaacaggtttggtgatgggtacaccatcatcctgcgggtcggggggggcgagccgcgg
ttagagccggtgatagagctgatcgaacatgagcttcccggcagcatgttgaaggagaag
cacaggaacatgctgcagtaccagctaccgtcttcactgtcctcgctggcacggatcttc
agcatcctgtccaggaacaaagagcagctccacatcgaggactactccgtctcacagacc
acgctagaccaagtatttgtcaattttgccaaggaccaaagtgatgaggaccacttcaaa
gacatttccataaacaggaacgacgccgtggtggacttatcacagctcgacaccttccta
acggacaaaaaagccaaggagaccattttgtaa
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integrated database retrieval system
