Trichomycterus rosablanca: 134326077
Help
Entry
134326077 CDS
T09921
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03030
DNA replication
trn03410
Base excision repair
trn03420
Nucleotide excision repair
trn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134326077 (rfc1)
03410 Base excision repair
134326077 (rfc1)
03420 Nucleotide excision repair
134326077 (rfc1)
03430 Mismatch repair
134326077 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trn03032
]
134326077 (rfc1)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134326077 (rfc1)
DNA replication proteins [BR:
trn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
134326077 (rfc1)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
134326077 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_16
AAA_7
AAA_30
AAA_33
BRCT_2
RuvB_N
AAA_14
Rad17
nSTAND3
RNA_helicase
NTPase_1
AAA_17
AAA_18
HrpB2
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
134326077
NCBI-ProteinID:
XP_062864349
LinkDB
All DBs
Position
14:complement(36933000..36947368)
Genome browser
AA seq
1099 aa
AA seq
DB search
MDIRRFFAPKPGRGSSGTEEEPKSKKKKPAAKVKSSASDAKPSAKRRPRVIADSDSDEDE
AVKDRKTTSSSSSSSSKGKPAAPGRKDPVTYLSDSDSDDAFASLKKPPRLKENGRSEATK
GPKPTAAGSKEVKSAPVKSPQTKGAPPKKALGPTPTEPVTPKRTPTSVMDYFGTSDVQRS
DKKLVASAKRKAPAQDPDDRLDDEAVARQLQADDDMEVRRHPSPTVPAPSLEKQIHEDEA
FARTLAASDDAPLPKKARVDPATPSPSKSGSKVDAASPLKKSPVAKKSPPVKKSLVAKAS
SKLALMKRKAEQQREEEQREEQREEQRRGEMKITPKKEPAKRAPSEKAATPKSASASGGA
GGAPTEPEASPEDKKRGNSAAFRNYLNRDGPRALGSKEIPQGEENCLEGCVFVLTGVLES
MERDETKSLIERHGGKVTGNVSRKTTYLVLGRDSGASKTDKARSLGTTVLTEDRLLDLIR
TRPGKRSEYELAAEAQTRATKPSKSKRTPPGKAEAEKSLESGSGRPAPPAADDALLWVDK
YRPRSLKNLIGQQGDQSCANKLMRWLQDWHRNRGAGAKPAGARFGKFGGKDDGSGFKAAL
LSGPPGVGKTTTAALVCEELAYSYVEMNASCTRSKNSLKQVIAESLNNTSIKNFYTGASQ
AVSDKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYD
LRFQRPRVEQIKGAMMSIAFKQGLKIPPPALNEIILASNQDVRQVLHNLSMWSATDKVMT
YDQARADALKARKDVRMGPFDVCRKVFVAGEETANMTLIDKSDLFFHDYSLAPLFVQENY
VHVRPAAAGGNLKNHLVLLSKTADSICDGDLVDKQIRSRQAWSLLPTQAVYASVLPGELM
RGYMSQFPTFPSWLGRFSSTGKHSRVVQELSSHMSLRTLSSREAVNLDYLPYLRSALLEP
LRSRGVHGVAHSVKLMDDYHIIKEDFDNIMEISTWAGQDEPYSKLHPKVKAAFTRTYNKE
SHMTPYSLQEVKKGRRGAAEPDADTQGRDEEEEEEEETVATDAMIKQKKSKASKETKTSK
ETKRDRAADSTKGKSRGKK
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggacatacgccggttcttcgcgcccaaacccggccgaggaagcagcggcaccgaagag
gagcccaagagcaagaagaagaagccggcggcgaaggtcaagagctctgcgtccgacgcc
aaaccctcggccaagcggaggccgcgagtcatagccgattcagactctgatgaagacgag
gcggtgaaggacaggaagacgacctcctcctcctcctcctcctcatctaaagggaagccg
gccgcgcccgggagaaaagatcccgtgacgtacctgtctgactcagattcggatgacgcc
ttcgcctcgttgaaaaagccccccagactaaaagagaacgggcgcagcgaagccaccaag
ggccccaaacctacagcggcgggatccaaggaggtaaaaagcgccccggtgaaatcgccc
cagactaaaggagcccctcccaaaaaggccctcggccccaccccgaccgagccggtcacg
cccaagcgcacccccacctcggtcatggattacttcgggacgtccgacgtccagcggtct
gacaagaagctggtggccagcgccaagaggaaagcgccggcgcaggatcccgacgaccgg
ctggacgacgaggccgtcgcgaggcagctacaggccgacgacgacatggaggtgaggcgg
cacccgtctcccaccgttcctgccccatcactggagaagcagatacacgaggacgaggcc
ttcgccaggaccctggcggccagcgacgacgcccctctgcctaaaaaggctcgcgtggac
ccggccacgccctcgccatcgaagagcggctccaaggtggacgccgcgtctccgctgaag
aagagcccggtggcgaagaagagccccccggtgaagaagagcctggtggcgaaggccagc
tccaaactggctctgatgaagaggaaggcggagcagcagcgggaggaggagcagcgggag
gaacagcgggaggagcagcggaggggcgagatgaagatcacgccgaagaaagagccggcc
aagcgggcgccctcggaaaaggccgccacccctaaatctgcttccgcgtcagggggcgcc
ggcggggccccgaccgaacccgaggccagcccggaggacaagaagcgcggcaattcggcg
gcgttcaggaactacctgaaccgagacgggccgcgggcgctgggctccaaggagataccg
cagggagaagagaactgcctggaggggtgcgtgttcgtgctgacgggagtcctggagtcc
atggagcgggacgagaccaagtccctcatcgagcgccacggcgggaaggtgacgggtaac
gtgagccgtaagaccacctacctggtgctgggccgggacagcggcgcgtccaagaccgac
aaggcccggagcctcggcaccaccgtactgaccgaggaccggctgctggacctgatccgg
accagacccggcaagaggtccgagtacgagctcgccgccgaggcccagactcgagccacc
aagccttccaaaagtaagcgcacccccccggggaaagccgaggccgagaagagtctggag
tcgggctcagggagaccggcgccccccgcggcggacgacgccctgctgtgggtggataag
taccgccctcgcagcctgaagaacctgatcgggcagcagggcgatcagagctgcgccaac
aagctgatgagatggttgcaggactggcaccggaaccgcggcgccggcgccaaaccggcc
ggagcgcgattcgggaagttcggggggaaggacgacggttccgggttcaaagccgcgctc
ctgtccggacctcccggcgtgggcaagaccaccacggccgccctcgtgtgtgaggagctg
gcctacagttacgtggagatgaacgccagctgcacccgcagtaagaacagcctgaagcaa
gtcatagccgagtccctcaacaacaccagcatcaaaaacttctacacaggtgcctctcag
gcggtcagcgacaagcacgtcctgatcatggacgaggtggacggcatggcgggaaacgag
gaccgcggaggaattcaggagatgatcggcctgatcaagcagtccaagatccccatcatc
tgcatgtgcaacgaccggaaccatcagaagatccgctcgctcgctaactactgctacgac
ctgcgcttccagcggccgcgcgtggagcagatcaagggcgctatgatgtccatcgctttt
aagcaggggctgaagatcccgccccccgcgctgaacgaaatcatcctggcgtccaatcag
gacgtgcgacaggtgctgcacaacctgagcatgtggtcggcgacggacaaggtcatgacc
tacgaccaggccagagccgacgccctcaaggccaggaaggacgtcagaatggggccgttc
gacgtgtgtcggaaggtcttcgtggcgggtgaggagacggcgaacatgaccctgatcgat
aagtccgatctcttcttccacgactactcgctggcgccgctgttcgtgcaggagaactac
gtacacgtacgccccgcggccgccggagggaacctgaagaatcacctggtgctgctgagt
aaaacggccgacagcatctgtgacggagatctggtggacaagcagatccgctctcgacag
gcctggtccctcctgccaacacaggcggtgtatgccagcgtgctgccgggcgagttgatg
cgcgggtacatgagccagttccccacgttccccagctggctgggccggttctccagcacc
gggaagcacagccgcgtggtccaggagctgtcgtctcacatgagcctgaggacgctgagc
agcagggaggccgtgaacctggactacctgccgtacctgcgctccgccctgctggagcct
ctgcggtcccgcggggtccacggggtcgcccacagcgtcaagctcatggacgactaccac
atcatcaaggaggacttcgacaacatcatggagatcagcacgtgggcggggcaggacgag
ccctactccaaactccaccccaaggtgaaggccgcgttcacgcgcacctataacaaggag
tcccacatgacgccgtactcgctgcaggaggtgaagaagggccgcaggggggcggcggaa
cccgacgccgacactcagggacgagacgaggaggaggaggaggaggaagagacggtcgcc
acggacgccatgatcaagcagaagaagagcaaagcatcaaaggagaccaagacatcaaag
gagacgaagcgggaccgagccgccgattccaccaagggtaaaagcagaggcaagaagtga
DBGET
integrated database retrieval system
