Trichomycterus rosablanca: 134327111
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Entry
134327111 CDS
T09921
Symbol
pcdh18a
Name
(RefSeq) protocadherin-18a
KO
K16499
protocadherin delta 2
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
trn04515
]
134327111 (pcdh18a)
Cell adhesion molecules [BR:
trn04515
]
Cadherins
Protocadherins
134327111 (pcdh18a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
134327111
NCBI-ProteinID:
XP_062865257
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Position
14:7016179..7026146
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AA seq
1039 aa
AA seq
DB search
MLCLLVLLAGTCSLATSRTLKYRVKEEQEAGTVIGSLKDDARDVLANLPSSVPLRFRAVQ
RGGASALAVREHDGQISVRGRLDREKLCDRNPNCSVEFDVLTLPTEHLQLFHVQVEILDV
NDHAPRFPRPLVPLEISETATVGTRVPLDSAADPDVGVNALSTYSLSASDTFGIDVLTGT
NGAKYAELVVLKELDREMRSGYDLLLTALDNGTPQKTGTTLLKITIADSNDNNPVFTESS
YTIEVPEDSAPGVLLIDLNATDADEGTNAKIVYSFSSHVSPKVKETFRIDPETGHLTLLK
KLDFETDDSFDVDVQAQDSGPNSMPAHCKITVKVKDVNDNKPDVSVSLMSDGNDEDAASV
SESAPLDTFVALVRVDDADSGLNGEVVCHLRGQGHFKLQKTNERNYMILTNATLDHETHS
EYVLTLIAEDRGTPSLSTMRHFTVRVQDENDNAPYFDKARYDIFKEENNSPGAYLAAVHA
TDPDLGDNGHVSYSILDSIVHGSNINTYVTVDPSSGTIYALRTFDHEEISHISFEVQARD
YGNPSLSSNVTVVLNILDVNDNRPVIVAPPLRNHSTEIPVSKNSDYGDLITTVSATDRDS
GANGDLVCTIVSGNDLGYFYMDTRTCEIRTNVSLRDFAGDHADLTILVQDQGSKPLGTKA
VLRLVLVENPENLADPQAAGGARGNVLDPSTIIIISLGAVCGLLIVIMAALALRCSRDKN
DTRSYNCRVAESNYQHRPRKPSRQVHKADITLVPTVNGALPVHHHHEEHMVPIQSLNSLI
TVSANQIPESFVLELTHTTPTVEQVSQLLSLLHQGQYQPRPSFRGNKHSRGYRYTLPDLD
KFSLKDSGRGDSDSDGELGRDSPIDRLLGDGFSELFHVDTHSRVHSATKLCTEECRVLGH
SDQCWMPSFSVDDERRSFSTFGKDVEDEEEDVDAGGDKSLLSDINSVFHRLVPSSYPESA
DVTEGSTSVENKKCLLPGNFQNSNSHGSMAKWLPPVEEIPENYEEEEMESAAGQCNHGQE
NDDEFCAEINQLLLDVRLS
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgctctgcctactggtgcttctggctggtacttgtagccttgctacgagtaggacgtta
aaatatcgggtgaaagaagaacaagaagcgggcaccgtcatcggttccctgaaggacgat
gcccgagacgttctcgccaacctcccgagttcggtcccgctccgtttccgggccgtacag
cgcggcggtgcgagcgccctagccgtccgcgaacacgacggccagatcagcgtgcgaggc
cgactcgaccgcgagaagctctgcgaccggaacccgaactgttcggtcgaattcgacgtc
cttaccctgccgactgagcacctccagctgtttcacgttcaggtcgagatcctagacgtg
aacgaccacgcgccacgctttccacgacccctcgtgcccctcgagatctccgaaacggct
acggtcggaacacgtgttccactagatagcgctgctgatcctgacgtcggcgtgaatgct
ttgagcacctactccctcagtgcgagcgacaccttcgggatagacgtcctcactgggacc
aacggcgccaagtacgccgagctagtggtgctcaaggagcttgaccgggagatgcgctcc
ggctacgacctgcttctgaccgctctggacaacggaactccacagaaaacaggaaccacg
ctgttaaagatcacaatcgcggactcaaacgataacaatcctgttttcaccgagtcttcg
tatacaatcgaagttcctgaggactcagcgccaggggtcttgctaatagatcttaatgcc
accgatgccgacgagggcaccaacgcaaaaatcgtctactcgttcagcagccacgtctct
cctaaagtcaaagagaccttccggatcgatccagaaacgggtcacttaacgctcctgaag
aagttggacttcgagaccgacgattcgttcgacgtggacgtccaggcgcaggactccggg
ccgaactcgatgccggcgcactgcaagatcaccgtcaaagtcaaggacgtcaacgacaac
aaacccgacgtcagcgtcagcctaatgtccgacgggaacgacgaagacgccgcgtccgtc
tcggaatcggcccctttggacactttcgtagccctggtccgcgtagacgatgcggattcg
gggctgaacggcgaggtcgtgtgccacctacgaggacaaggccacttcaaattgcaaaag
acgaacgaaaggaactacatgatcctgacgaacgccacgctagatcacgaaacgcattcc
gaatacgtgctcacgctaatcgccgaggaccgcgggacgccgagtttgtccacgatgaga
cactttacggtccgagtgcaagacgagaacgacaacgcgccgtatttcgacaaggcccgt
tacgacatcttcaaagaggagaacaactcacccggggcgtatcttgccgcggtgcacgcc
acagatccagacttaggtgataacggtcatgttagctactccatcttggacagcatcgtg
cacggaagcaatatcaacacctacgtcactgtggatccgtcaagtggcacgatttacgcc
ctgcgcaccttcgatcacgaggaaataagccatattagctttgaagtacaggcccgtgac
tatggcaacccttcgcttagcagcaacgtcactgtagttctgaacatcctagatgttaac
gacaaccggcctgtcatagtcgcgccacctttacgaaatcacagcactgaaatacccgtt
tccaaaaattccgattacggagatttaatcacgacggtttcagccacagaccgcgactcc
ggggccaacggggatctcgtgtgcaccatcgtctccggaaacgacttgggctacttctac
atggacacgcgcacttgcgaaatccgcacaaacgtgagcctacgcgacttcgccggagat
cacgccgacctgacgatcctcgtccaggatcagggcagcaaacccctcgggacgaaagcc
gtcctccgcctggtgctggtggaaaacccggagaacctggccgaccctcaggcggcaggt
ggcgccagagggaacgtcctcgacccttcgacgatcatcatcatttcgttaggcgcggta
tgcggactgttgatcgtgatcatggccgccctggcgctacgctgcagccgggacaagaac
gacacgcgctcgtacaactgccgcgtcgccgagtcgaactatcagcaccgccccaggaaa
ccgtcccgccaggtccataaagccgacatcaccctggtgccgacggtcaacggcgctctc
ccggtgcatcatcaccacgaggagcacatggtgcccatacagtcgctgaacagtctcatc
acggtgtcggccaatcagattccggagagctttgtgctagagctaacgcacaccacgcca
accgtggagcaagtttcacagctgctctccctactccatcagggtcagtatcagccccgg
cccagcttcagaggaaacaaacactctcgcggctacagatacacactaccagacttggat
aagttcagcctgaaggacagtgggcggggcgacagtgacagcgacggcgagctcggccgt
gattcgcccatcgaccggttgcttggcgacggattcagcgagctcttccacgttgacaca
cacagccgagtccactcagctacaaagctgtgtacggaggagtgtcgtgtcctcggccac
tcggatcagtgctggatgccgtcgttctccgtcgatgatgagcgccgcagtttctccacc
ttcggtaaagacgtggaggacgaagaggaggacgtggacgccggaggagacaaatctctc
ctctccgacatcaactctgtcttccaccgcctggtcccctcgtcctaccccgagtccgcc
gacgtcaccgaaggttccacctccgtcgaaaacaagaagtgccttctgccgggaaacttt
cagaactctaacagtcacggctccatggccaagtggctgccgccggtggaagagattccc
gagaactacgaagaggaagagatggagagtgcagctggtcagtgcaaccacggccaagaa
aacgacgacgagttctgtgctgaaatcaatcaactgctgctggacgttcgactgagctaa
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