Trichomycterus rosablanca: 134328117
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Entry
134328117 CDS
T09921
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b isoform X1
KO
K13126
polyadenylate-binding protein
Organism
trn
Trichomycterus rosablanca
Pathway
trn03015
mRNA surveillance pathway
trn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134328117 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
134328117 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134328117 (pabpc1b)
03041 Spliceosome [BR:
trn03041
]
134328117 (pabpc1b)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134328117 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
134328117 (pabpc1b)
Spliceosome [BR:
trn03041
]
Complex C
Other components
Complex C specific factors
134328117 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_7
RBD_RDR6
RRM_3
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
134328117
NCBI-ProteinID:
XP_062865344
LinkDB
All DBs
Position
2:complement(737262..744051)
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AA seq
632 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHSDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDEKLKDVFSKYGTAMSIRVMTDDGGKSRGFGFVSFER
HEDAQKAVDEMNGKELNGKLVYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWAAQGVRPQHFQNMPTTMRPSAPRPQTYGSMRPASQVPRVMSAQ
RVAAQTVGPRPATAAPSTAPVRAVPQYKYTPTVRNPQQHITNQPQVSMQQPAVHVQGQEP
LTASMLAAALPQEQKQMLGERLFPLIQNMHPTLAGKITGMLLEIDNSELLHMLESPESLR
SKVDEAVAVLQAHQAKEAAQKNVTNSAGVPSG
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcccagttaccccatggcctccctgtatgtgggcgacctgcactcc
gatgtgaccgaggccatgctgtatgagaagttcagccctgccggcgccatcctgtccatc
cgggtgtgcagggacatgatcacccggcgctccctcggatacgcctatgtgaacttccag
caacctgcagacgctgagcgtgcgttggacaccatgaattttgacgtgattaaaggccgg
cccgtgcgcatcatgtggtctcagcgtgacccctctcttaggaaaagtggcgtcggcaac
atcttcatcaagaacctggataaatccatcgacaacaaggccctgtatgacaccttctcg
gcttttggcaacatcctgtcctgtaaggtggtttgtgatgagaacggctcgaagggttac
ggctttgtgcacttcgagacccaggaggcggctgaaagggccatcgaaaaaatgaacggc
atgttgctcaacgacaggaaagtgttcgtcggccgattcaagtctcgcaaagagcgcgag
gccgagctcggcgcaagagccaaggaattcaccaacgtgtacatcaagaacttcggcgag
gacatggacgacgagaagctgaaggatgtctttagtaaatatggcacggcgatgagcatc
cgggtcatgaccgacgacggcggcaaatccagaggtttcggtttcgtcagttttgagagg
cacgaggacgcgcagaaggcggtggatgagatgaacggcaaggagctgaacggaaagctc
gtctacgtgggccgcgcgcagaagaaagtggagcgtcagaccgagctcaagcgcaagttc
gagcagatgaagcaggaccgcatgacccgctaccagggcgtcaacctttacgtgaaaaat
ctggatgatggcatcgacgacgagcgcctgcgcaaggagttctctcccttcggaacgatc
accagcgcaaaggtcatgatggacggcgggcgcagcaaagggttcggcttcgtctgcttc
tcctctcccgaggaggccaccaaggcggtgacggagatgaacgggcgcatcgtcgccacc
aaacccctctacgtggctctcgctcagcgtaaagaggagcgccaggctcatctcaccaac
cagtacatgcagaggatggcgagtgtccgtgctgtgccgaatccagtcattaatccctac
cagcctgccccgccctctgggtatttcatggctgccattcctcaggctcagaacagagct
gcgtattaccccaccagccagctcgcacagctccgacccagtccgcgatgggccgcccag
ggtgtccgacctcagcacttccagaacatgccaaccaccatgagaccttctgctccaagg
ccacagacctatggttccatgagacctgcttcccaggttcctcgtgtgatgtccgctcaa
cgtgttgctgcgcagacggtgggtccacgacctgcaactgctgctccatctaccgcccca
gtgcgcgccgttccacagtacaagtacacgcccaccgtgcgcaaccctcagcagcatata
accaaccagccgcaggtctcgatgcaacagcctgctgtgcacgtgcaaggtcaggagcct
ctgacggcttccatgcttgctgcagctctaccacaggagcagaagcagatgctgggtgag
cgtctgttccctctgatccagaacatgcaccccactctggcgggtaagatcaccggcatg
ctgctggagatcgacaactcggagctgctgcacatgctggagtctcccgagtccctgcgc
tccaaggtggacgaggccgtggctgtgctccaggctcaccaggctaaagaagccgctcag
aaaaacgtgaccaactctgctggagttccaagcggctaa
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