Trichomycterus rosablanca: 134328696
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Entry
134328696 CDS
T09921
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03013
Nucleocytoplasmic transport
trn03015
mRNA surveillance pathway
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134328696 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
134328696 (ddx39b)
03015 mRNA surveillance pathway
134328696 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134328696 (ddx39b)
03041 Spliceosome [BR:
trn03041
]
134328696 (ddx39b)
Enzymes [BR:
trn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134328696 (ddx39b)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134328696 (ddx39b)
Spliceosome [BR:
trn03041
]
Complex C
Other components
EJC/TREX
134328696 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
134328696 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
134328696
NCBI-ProteinID:
XP_062865945
LinkDB
All DBs
Position
2:2560240..2569295
Genome browser
AA seq
434 aa
AA seq
DB search
MAENDVDNELLDYEEDEVDAAGGVVDGGLAGDGGNAALRKEGLKGSYVSIHSSGFRDFLL
KPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVTG
QVSVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLPIKKDEETLKRESPHIVVGT
PGRILALARSKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS
KEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI
FVKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMD
IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDARTLNDVQDRFEVNIS
ELPEEIDISSYSKS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgacgtggacaacgaactgctggactatgaggaggacgaggtggacgcg
gcaggaggtgtggtggacggaggcctggccggcgacggcggcaacgcggccctgaggaaa
gaggggctgaagggatcctacgtgtccatccactcgtcagggttcagggactttctgttg
aagcccgagctcctcagggccatcgtggactgtggattcgagcatccgtctgaggttcag
cacgagtgcattcctcaggccatcttgggcatggatgtgttatgccaggccaagtccggc
atgggaaagacggccgtctttgtcctggctacgctccagcagatcgaacccgtgaccgga
caggtgtcagtgctggtaatgtgccacacccgggagctggcatttcaaatcagcaaagag
tacgagcgcttctccaagtacatgcccactgtcaaggtggcagtgttctttgggggtttg
cctatcaagaaggatgaggaaaccctaaaaagggagagtcctcacatcgtggtggggacg
cccggccgcatcctggccctggcacgcagcaagagcctcaacctgcgccacatcaagcac
ttcatcctggacgagtgtgacaagatgctcgaacagctggacatgcggcgtgacgtccag
gagattttccgcatgaccccgcacgagaagcaggtcatgatgttcagcgccaccctgagc
aaagaaatccgcccggtctgccgaaagttcatgcaagacccgatggagatattcgtggac
gacgagaccaagctgaccctgcacggcctgcagcagtactacgtcaagctgaaggacaac
gagaagaaccggaagctcttcgacctgctggacgtcttagaattcaaccaggtggtgatc
ttcgtgaagtcggtgcagcggtgtatcgccctggcccagctgctggtggagcagaacttc
ccggccatcgccatccacagagccatgccccaggacgagagactcgctcggtatcagcag
ttcaaggactttcagaggcggatcctggtggccaccaacctgttcggccgaggaatggac
atcgagagggtcaacattgccttcaactacgacatgcccgaggattcggatacgtacctg
cacagggtcgcccgagcgggcaggttcggcacaaagggtttggccatcacgttcgtgtcg
gacgaaaacgatgcccggactctgaacgatgtccaggacaggttcgaagtgaacatcagt
gagcttcccgaggagatcgacatctcatcatacagtaagtcctga
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