Trichomycterus rosablanca: 134329216
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Entry
134329216 CDS
T09921
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134329216 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134329216 (parn)
Enzymes [BR:
trn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
134329216 (parn)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
134329216 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
PTHB1_pf
RRM_1
Motif
Other DBs
NCBI-GeneID:
134329216
NCBI-ProteinID:
XP_062866478
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All DBs
Position
15:complement(33770353..33779988)
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AA seq
652 aa
AA seq
DB search
MEFTRQNFKEKLICVYSAVQEADFLAIDGEFSGLSDGPPVSMLTNGMDTPEERYSKLRKH
SMDFLLFQFGLCAFRYDQSQSRYITKAFNFYVFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFRHGIPYLNQAEESQLREQYEERRNQANGVGTPSYSSPTSCKGPVNVPEEHKDF
INRVVEKVENLLNNSEKTVELEPCSGFQRKLIYQTLNWKFPKGLHVETVEKEKKERCIQI
SKVDEPERRRIEQQKHEREQEELNDAVGFSRVVHAISKSGKLVVGHNMLLDVMHTIHQFY
CPLPEELDDFKEVTMCVFPRLLDTKLMASTQPFKEIITNTSLAELEKQLKEKPFKAPKVE
WSEGFQIYDTASEQLHEAGYDAYITGLCFISMANYLGSFLTPPRAHISARSKLIEPFYNK
LFLMRVADIPYLNISGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWMDDTSA
FVSLSQLEQVQIAVNTSQYAESYRIQTYAEYMESRQENTHSRRRWPEDGWAEPAYRSVAM
TRQHDRSSLKRSISPTDQPSDFSGVADSNWCNYANAKRVKADGEIYAGTSAESSIDAADS
STAADWLDTSHDGVGASTSPKQEAESMEAWIQPSTNKENQGSSGLFDVPQVW
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggagtttacgcggcagaattttaaagagaagctgatctgcgtttactcggctgtacag
gaagctgatttcctggccatcgatggagaattttcaggactgagtgatgggccaccagtc
agcatgctgacgaacggtatggacacgccagaggaacgatacagtaaactaaggaagcac
tcgatggactttctgctgtttcagttcggcctgtgtgccttcagatacgaccaatcacag
tccaggtacatcacgaaagcttttaatttttacgttttcccaaaacccttcagcagaacc
tctccggatattaaattcatctgtcagagctccagtatcgatttcctggccagtcagggc
ttcgacttcaacaaagtgttccgccatggtattccatacctgaaccaggctgaggagtct
cagctgcgggaacaatacgaggagaggcggaaccaagcgaacggggtgggcacgccctcc
tacagctcacctacttcctgtaagggaccggttaacgttcccgaggaacacaaggacttc
atcaacagagtcgtggagaaagtggagaacctgttgaataactctgagaagactgtggag
ctggagccgtgctctgggtttcagaggaagcttatttaccagaccctgaactggaagttt
cctaaaggccttcatgtcgaaactgtggaaaaagaaaagaaggagcgttgtatccagatc
agtaaggtggatgaacctgagaggagaaggatagagcagcagaagcatgaacgagagcag
gaggaactaaacgatgctgttgggttctccagagttgtacacgccatctccaaatctggt
aaattggtggtcgggcataacatgctgctggacgtcatgcacaccatccaccagttctac
tgccccctgcctgaggagttggatgacttcaaagaggtcacgatgtgtgtgtttccacga
ctgctggacacaaagctgatggcatcaacacaaccattcaaggagatcattaccaacaca
tcactggctgagctggagaagcagctgaaggagaagccgtttaaagcccccaaagttgaa
tggtcggagggatttcagatttatgacacggcgtccgaacagctgcatgaagctggttac
gatgcgtacatcaccggcctctgcttcatctccatggctaattatctgggttcctttctt
actcctccaagagcacacatctccgcccgctccaagctcatcgagcccttctacaacaag
ttgttcctcatgcgagtggctgatattccttacctgaacatcagtggaccagacttgcag
ccgaagcgagaccacgttctgtatgtgacattccctaaagagtggaaaaccagcgacttg
taccagctcttcagtgccttcggtaatatccaggtatcgtggatggatgatacatcagcg
tttgtgtctctcagccagctggagcaagtgcagattgcggtgaacaccagtcagtatgcg
gagagttaccgaatccagacgtacgcggagtacatggagtccagacaggaaaacacgcac
tcgcgcaggaggtggcccgaggacgggtgggcggagccggcgtacaggtcggttgccatg
acgaggcagcatgacagatcgtcactgaagaggagcatcagccctacagatcaaccctca
gattttagtggtgttgcagacagcaactggtgtaactatgccaatgcgaagagggtcaaa
gctgatggtgaaatttacgctggtacgagtgcagaatccagtatcgatgcggcagactcc
agtacagcagccgattggctcgacacatcacatgatggggtaggagcgtcaacaagccca
aaacaagaggcggagtcaatggaagcctggattcaaccctcaaccaataaggagaatcag
ggttcatcaggactatttgatgttcctcaggtttggtag
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