Trichomycterus rosablanca: 134329353
Help
Entry
134329353 CDS
T09921
Symbol
zc3h13
Name
(RefSeq) zinc finger CCCH domain-containing protein 13 isoform X1
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134329353 (zc3h13)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
134329353 (zc3h13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_DUS3L
zf-CCCH_4
zf-CCCH_2
zf-CCCH_PAN3
Motif
Other DBs
NCBI-GeneID:
134329353
NCBI-ProteinID:
XP_062866658
LinkDB
All DBs
Position
15:16778564..16832675
Genome browser
AA seq
1739 aa
AA seq
DB search
MSKIRRKVTVENSKTISESSSSTTTPSRRPSVFERLGPSTGGNATEQTQCRNWLKTGNCS
YGNTCRYTHGTRGKSFSGGLSRSAERPTGDLRERMKNKRHDVDADSQTREQDEPTLLTLR
QKDSSRSRHREKEDIKITKERTPASEEEAQEWEANREDSDNGDYDYELSLEMKRQKIQHE
LMKLEQENMDKREEIVIKKQESMTKTSSTSKEKGSPERSSSKDSPISCKSSSSPKRKPSG
SPKRKSTGKSSGSSKKDKKLSTSSVLSSPVTEQSKADETDSRSSKSGHGKKKGPRTPSPP
LSVPLDLPTGGKKHKGKHKNKEKNEDKQKEGKERGRDIDKHKEKKEKRRDRSDSSHKTKR
ALTSEERSGSVSSPCREVSPQTKRKSVSPKPAAQKQSSPQRSCTPPRHHRSPSPPSRPHQ
SPSSHSSSSHQRHSPSPRHCRGSTSPSYQRDLPPLTSSPTITQTSHRSRSHSPTSPQRSS
PASRHHSQGRERDKGRGERERERSPIHDRHHERREESRGKREKDSGREDRSYEADQSSSR
DDRETRESRDRHSDRDRRYARDDRQYRTGELKEARDARDRSGRETLEHRERDRDRERERE
KDKERNDSHRKEDVSAQEEKSYGRGHGREEDRSERRTESRNDSRTERMGRGRGRAAETGD
KGSARGSRSLQGEGGGQDGWETRSQREKSSDRNVERGTERDRHDGDRQRGEQVKDSSYDR
RGSQADRDRRDHRDRADQRAASPGRYQSRSDETEQEDRRDVRREDRGRERDRDRERERER
EKDREREVERERDRVRERDREREEREREREEREREEREREREREREREEREREREERERE
RERERERERERERKERERERELRERERQREWEEREKAREDRRERREETRDERSSRDGHED
RKNGGRKRHRLDTPSPRPSPKKARDGSPIDSEGYNSADEKGDKHRLLSQVVRPPEPSRSP
TRTSTDDKSTRWRDSDRRSDKKDVRGRVEEVESRSDRSSVRGAERRGDHGPDATASESRR
GKEQRDVSPPPTSGGAEGRDSTCGGQEEGKKKHKSLKKNLKKNRKDDASAGASGDRFNTE
PSAPLASFSSAASDTLRPLISPPKPGKKKCPERKRRRSRGAESDQSEDEQPMGKRRRGPR
TPPPINKEDLPSQRALLPAAPPMKMETNFSDWSDEEVPERTETLSERPLERLLPRRNLAP
LLPDPPMLMQNLPLQPLLPQHMLRKPQQVDPHQQRSSSMGSNPSRAPSHRLRSPSNDSAH
RGDDQGSRSRRAHRQGANSRDRDRERERERERVATGETIGGREERKSRIDQLRRGEPSRS
TSSDRQDSRSHSSRRSSPESERQGRSRAGSYDSRERDQFERDRRDQRQVQNQPPLQQRDW
EPEPREWCSRGREPLLPRPDREPTRERDLRAMRERERLLPEGLLSHERLERERGDRERDR
DRDRERDRERDRGERERMLPFDLPPLGEPKGRVEIRMERGDYEPLLPRDVLMDMDKPSSA
DEPLVQMDSCEAEKIDSLDEDDVKGDDAQSVVSGGEEYEPISDDELDEILADSQRRDDQQ
DEEKIPGPLDVIDVDWSSLMPKPKQEARTPGAALLRFTPGAVLLRAGVSRRLAGPQLLAH
VKEICIKELDDAKDVEKLFEHDLGVLNMAALNRRMERANLLQNLGLCGKALCARRDIAIR
RQLLRNDKGTTKQIYTGTPVIDQELLQLSVRLFKKKMLGGQEKADPASIANTTAEVCVL
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagatcaggcggaaggtgacagtggaaaactcaaagacaatatcagagagcagc
agcagtacaaccactccatctcgcaggcccagcgtctttgagagactcggacccagtaca
ggtggtaatgccacagagcaaacccagtgtagaaactggttgaagacaggaaattgcagt
tacggcaacacttgtcgctacacgcatggaacaagaggcaagagtttttctggcgggctt
agcaggtcagctgagaggcccactggtgatcttcgggagaggatgaaaaacaaaagacat
gatgtagatgcagacagtcaaaccagagagcaagacgaacctactttactcacattaaga
cagaaagattcatcccgaagcagacacagagagaaagaggatataaagatcactaaagaa
cgaactccagccagtgaagaggaagcccaggagtgggaagccaatcgagaagactcagac
aacggtgactacgattacgagttatccctggagatgaagaggcagaagatccagcacgag
cttatgaagcttgagcaggagaacatggacaaacgagaagagattgtcattaagaagcag
gaatcgatgaccaagaccagcagcacttccaaagagaagggatctcctgagcgctccagt
tcaaaggactcacccatatcttgcaaatctagcagctctcccaagagaaagcccagtggt
tcgcctaaacgaaagtccactgggaagagcagtggctccagcaaaaaggataaaaaatta
tccacctcatcagtcctgtcctcccctgtgacagagcagagcaaagcagatgagacagac
agcagatcttccaagagtggacatggcaagaagaaagggccacggacacccagtccccct
ctctctgtgcccttagacttgcctacagggggcaaaaaacataaaggtaaacacaagaac
aaagagaaaaatgaggacaagcagaaagagggcaaggagcggggcagggacatagacaag
cacaaagaaaagaaagaaaaacgcagggaccgctctgacagctcccacaaaacaaagcga
gctttgacctcagaggaacgttctggtagtgtatcgtctccttgtcgagaggtctcaccc
cagacaaagaggaagtctgtgtcccccaaacctgcagctcaaaagcagagttcaccacag
agatcctgtactccaccacgtcatcataggagcccctctccaccatctcgccctcaccaa
tccccctcctctcactctagctcttcccatcaacggcactctccctcccctcgtcactgc
cggggttctacttctccatcctatcagcgagatctcccacccttgacgtcctcccccacg
attacccagacctcacatcgttctcgttcccattcacccacctcccctcaaaggtccagc
ccagcctcccgccaccactcacagggtcgggagagagataaaggaagaggggagagggaa
agagaaagaagtcctatccacgacagacatcatgaacgcagagaagagagccgcgggaag
cgagagaaagatagcgggcgtgaagatcgcagttatgaagctgatcaaagttcctcaaga
gatgatagagagacaagagaaagccgagaccgtcactctgacagagatcgtcgttatgct
cgtgatgaccgtcaataccgcactggtgaactcaaagaagcaagggatgctagagaccgg
tctggccgagaaaccctggaacacagagaaagagaccgggacagggagagggagcgagaa
aaagacaaagagagaaatgactctcacagaaaggaggatgtatcggcacaggaggaaaaa
agttatggaagaggacatggcagagaggaggaccgcagcgagagaaggacagaaagcaga
aatgactcccgaacagaacgaatgggaagaggacgaggacgagcggcagaaactggtgat
aaagggtcagctcgcggatctcgttctttacagggagaaggtggtgggcaggacggatgg
gagactcgcagccaaagagagaaaagctctgatagaaatgtggagagagggacagagcgt
gatcgccacgatggtgacaggcaacgtggagagcaggtcaaagactcctcttatgatcgg
cgcggaagtcaggcagaccgagatcgccgtgaccatagggacagagcagatcagagagcg
gcctctcctggccgctaccaaagccgcagtgacgaaacggagcaggaagaccggagagat
gtcagacgagaggacaggggccgggagcgagacagagacagagaaagggagcgggaacga
gaaaaggatagagaaagagaggtcgagagagagcgggaccgggtcagagagagagaccgg
gaaagagaggaacgagaaagggagagggaggaaagagagagggaggaaagagagagggag
agagagcgggaacgagagagggaagaacgggagagagagcgagaggagcgtgaaagggaa
cgggaacgtgagcgagaacgagagagagaacgggagaggaaggaaagggagcgagaaagg
gagctcagagagagggagaggcagagagaatgggaggagagagaaaaggccagggaggac
aggagagagaggagagaggagacacgtgatgagcgttccagccgggatggtcatgaggac
cgaaagaatggtggccgtaagaggcaccgtttggacactcccagtccccgaccctctcct
aaaaaagcacgagatggcagccctattgacagtgaaggctacaacagtgcggatgagaaa
ggtgataaacataggctattgagccaggtggtgcgtcctcctgagccaagtcgctcacct
acaagaacatccactgatgacaaatccacccgttggagggacagtgaccgacgttctgat
aagaaagatgtccgtggtcgggttgaagaggttgagtctcgaagcgatcggagttcagtt
cgaggggcggagcgtcgtggagatcatggtccagatgcaactgcttccgagtctagacgg
ggtaaagaacagagagacgtcagcccacctcctacctctgggggtgctgagggacgagac
tccacttgcggtggtcaagaggagggtaagaagaaacacaaatctctgaaaaaaaactta
aagaaaaaccgtaaagatgatgcgagtgctggtgcaagcggagaccgcttcaacactgag
ccttctgcacctcttgcttccttctcttcagctgcctcagacaccctgcgcccacttatt
tccccacccaaacctggcaaaaagaaatgcccagagcgtaagcgcagacgttcacgaggt
gctgaatcagatcaatctgaagatgaacagccaatgggcaagaggcgtcgtggcccacgg
acacctccaccaatcaacaaagaagacctgccttctcagcgggcactactccccgctgcc
ccaccaatgaagatggaaaccaattttagcgattggtcagatgaggaggtcccagaacgc
acagaaactttatcagagcgacctttagagcgtttgctgccccgtcgaaaccttgctcct
ctattacctgacccacccatgctgatgcagaacctcccactgcagccacttctgcctcag
cacatgttgcggaaacctcaacaggttgacccacatcagcaacgcagtagtagcatggga
agcaacccaagtcgggcaccctcacatagactccgatcaccctctaatgactctgcccat
cgcggcgatgatcaggggtcacgctcacggcgagcgcatagacagggggctaattcccgt
gatcgggacagagagagagaaagagaacgagagagggtggcaacaggtgagacgattgga
ggaagagaagagaggaagtcaaggatcgaccaattgaggagaggcgaaccaagtcgcagc
acctcttctgaccggcaagactcgagaagtcacagctctcggcggagctccccagagtca
gagcggcagggtcgttctcgtgccggctcgtatgacagccgtgagcgtgaccaatttgaa
cgtgacagaagggatcagcggcaggtgcagaaccagcctccactgcagcagcgtgactgg
gagccagagccccgtgagtggtgtagccgaggccgggagcccctccttcctcgtcctgac
cgggagccaacaagagagcgggacctgcgtgcaatgcgcgagagggagcgacttctgcca
gaagggctactctcacatgaacgccttgagcgtgaacgtggggatagagaacgggataga
gacagggacagagagagggaccgggagagagacaggggtgagcgtgagcgcatgctgcct
tttgaccttccaccactaggggagcctaagggcagagtggagataagaatggagcgtgga
gactatgagccactgctgcctagagacgtactcatggacatggacaaacccagttctgca
gacgaaccacttgttcaaatggactcatgtgaggcggaaaagatagatagccttgatgaa
gatgatgtgaagggagatgatgctcagtctgtggtgtcaggtggagaggagtatgaaccc
atcagtgacgatgagctagatgagatcttggcagacagccagagaagagatgatcagcag
gatgaagaaaaaatcccaggaccacttgacgtgattgatgttgactggtcaagcttgatg
cctaagccaaagcaggaggcccgaacacctggggcagcactgctcaggttcactcctggt
gctgtgctgctgcgggcaggtgtctctcgccgactggctggtcctcaactccttgcccat
gttaaagagatctgcattaaagagctggatgatgctaaagatgtggaaaagctgtttgag
catgacctgggtgtattaaacatggctgctctaaacaggaggatggaaagggcgaacctt
ttgcagaacctagggctgtgcggcaaggctctatgtgcacgcagagacattgccatccgt
agacaactcctcagaaatgacaaggggacgaccaagcagatctacaccggcactccagtg
atagaccaagagttgttgcagctcagcgtgcgtctcttcaagaagaaaatgcttggcggc
caggaaaaggctgacccagcatcaatagccaataccacagctgaggtctgtgtgttgtaa
DBGET
integrated database retrieval system
