Trichomycterus rosablanca: 134329495
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Entry
134329495 CDS
T09921
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134329495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134329495
03036 Chromosome and associated proteins [BR:
trn03036
]
134329495
Enzymes [BR:
trn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134329495
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
134329495
mRNA degradation factors
5'-3' decay
Decapping complex
134329495
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Gene silencing
piRNA pathway
134329495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
134329495
NCBI-ProteinID:
XP_062866854
LinkDB
All DBs
Position
2:complement(7984403..7996773)
Genome browser
AA seq
486 aa
AA seq
DB search
MATARMENVGPVVMGISKPNGLKGQPKPASQSGPTAQSNPFGKVGALKQAADSREGPGIR
FGDDWKKSLHLPPKDNRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDHIQAVVMVPTRELALQVSQISIQL
SKHLGGVKVMATTGGTNLRDDIMRLDEIVHVVIATPGRVLDLIKKGVAKVDKVQIMVMDE
ADKLLSQDFVVLIEDIISFLDKNRQILLYSATFPITVQKFMMKHLKKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGR
FGHLGLAINLITAEDRFNLKAIEDQLITDIKPIPSSIDKSLYVAEFHSADPDAEDAAEEQ
EIPQTL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggccactgcaaggatggaaaacgtaggtcctgttgtaatgggcatcagcaagccgaac
gggctcaaaggacaacctaagccagcttctcaatcaggacccactgctcagagcaatcca
ttcggaaaggtcggagctctaaagcaagctgcagactctcgtgaaggtcctggaatcagg
tttggtgatgattggaaaaagagcttgcatcttccacccaaagacaatagagtgaaaact
tcagatgtgacggccaccaaggggaacgagtttgaggactactgtttgaaaagagagcta
ctgatggggatctttgaaatgggctgggagaaaccttcccctatccaggaggagagcatc
cccattgccctttctggtcgtgacatcctggctcgtgccaaaaacgggacaggaaagagt
ggggcatacctgattcccatgctggagaggatagacctgaagaaagaccacattcaggct
gtagttatggtgcccactcgtgagcttgcactacaggtcagccagatcagcattcagctc
agtaagcatctgggaggagtgaaagtcatggccactactggcggaacaaacctacgtgat
gacatcatgcgtcttgatgagattgtgcatgttgtcatagcaacaccaggcagggttctg
gacttgatcaagaagggagtagccaaagtagataaggttcaaattatggtaatggatgag
gctgataagctgctctcgcaggactttgtggtgctcattgaggatataatcagtttcctg
gacaaaaatcgacagattttgctctattctgctacctttcccatcactgttcagaaattc
atgatgaagcacctgaaaaaaccctacgagatcaacttgatggaagaactgaccctgaag
ggtatcactcaatactatgcttatgtcaccgagagacagaaagtgcactgcctgaacaca
ctcttctccaggcttcagatcaatcagtcgatcatcttctgtaactctacgcagagagta
gaactactagccaagaaaattacccagctgggttactcatgtttctacatccatgccaag
atgatgcaggagtacagaaatcgagttttccatgacttcagaaatggactgtgcagaaat
ctggtatgcacagacttgttcaccagaggtattgacatccaagcggtgaatgtggtcatc
aattttgactttcccagaaatgcagaaacctacctgcatcgcattggccgctcagggagg
tttggtcatttgggcctggccatcaaccttattacagctgaggatcgctttaacctaaag
gccatcgaggaccaactgataaccgacatcaagcctattcccagcagcatcgataaaagc
ctgtatgttgctgagttccattcagctgacccagacgctgaggatgcagctgaggagcag
gagatacctcaaaccctctaa
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