Trichomycterus rosablanca: 134329632
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Entry
134329632 CDS
T09921
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
trn
Trichomycterus rosablanca
Pathway
trn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
134329632 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134329632 (vps8)
Membrane trafficking [BR:
trn04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
134329632 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
TPR_VPS8_2
Clathrin
WD40_CDC20-Fz
zf-RING_Vps41
zf-RING_UBOX
zf-RING_5
zf-RING_2
zf-RING_11
zf_RING_Vps8_fungal
zf-C3HC4
PHD_4
zf-C3H2C3
EIF3I
TPR_PEP5_VPS11
Motif
Other DBs
NCBI-GeneID:
134329632
NCBI-ProteinID:
XP_062867007
LinkDB
All DBs
Position
15:complement(13394674..13581498)
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AA seq
1418 aa
AA seq
DB search
MSESPDTRSLLSASSQLNLMEIDAIDDKEFDIPQVDTPPTLESILNEPEDEDEPFVLEDT
CLLNTENMDVHSCETSSLASSDSGDRAHLKRRRKPIETNTTVHGSVLRHSVLKGISAQIV
SAADKVDAGLPTAVTVSSVIAVGTSHGLALVFDQNQALRLCLGSTATGAEYGAVSALGIN
HDCTRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDLPTLAVCNDSGGSV
FELSFRRVMGMRTCESRCLFSGSKGEVCCVEPLHTAPELKDHPITHHCLLAMASLTKILV
IGLKPSLKVWMTFPYGKTDPASVPQLAWQFVAAQKAVNPILAFCRGDTVHFLLVKKDESG
TVHVIKQRQLQLGYDLISLTWLNSRTLVLMDSTEKLHVVDRPSQEELETFDLAELQLVYN
SSHFKSLATGGNVSQALALVGEKACYQSVYSYGGQIIYLGTKSVHVMTLRNWRERVDHFL
KQDKFAEALSLAWSFHEGTAKAVLGLLGDPAKRKGVLADKIVEILFQYVERSLKKCPEQG
KIQLLEQHFQDMIPVVMDYCLLLQRTDLLFNQIYSRLVENSVAKSVFLESLEPYILSERI
GCLTAPVMRDLLSYFQENGMMDSVEACLVHMDITNLDIQQVVQMCWENQLYDAMMYVFNT
GMNDYISPMEKLFQVIGPPLREGKPLTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLV
PQVKNQVFEFLIRLHSVEATSVEEEVYPYIRTLLHFDTREFLNVLALTFEDFKNDKQALE
YQQRIVDILLKVMVDNSDFTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCSPD
DDSRHTERQQVLLELLQVGGMVQFDESQLLVLAEKAEFYQICEFLYEQKHLYDQIISCYL
KDPLRKEEVYNYIHNILSMPGYSPEEKQTAWNKSLEHVKELVSINPAKAAELVCGHFISE
VEPIITVLEDDYLIFQFLNNLLDPRDGQKPEAVLSLGPELHEQLVGLMCLFSPRQVTPFL
QTSQNYRLEETVQITKQHELHEATAYLLEKKGDVQGAFQVLLQTLKAKLHTLAQESCETT
GTRSEEEEEAAEERSLLVGVEEALSDIIALCHRSSHGLNQPQREALWFPLLEAMMSPQRF
LKGPDAKHTSEALKELTMKVLNNMSSFIALPAIIQRILQDPVYGKGKLAEIQGLILGMLD
TFNYEQTLLETTTNLLNSDLHWSLAHLRKAVSRGLHPRQDHCNICLQQYKRRQENEEEII
IFSCGHLYHCQCLQRKEQGVLGKDPGTTGDRVHSWSCYKCTSSQGTRPGDRLIAEGGRAR
STSLAQTKVTSVHRGSAAEAHGRKELQEVTLDAQQMQAWDQLRCMYRGPSRLAILTEMTS
SHSSEKAGLLNPIHPGTGTIFESENLSLKLSPPPLMEE
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatctccggatactcgcagtttgctctctgcctcttcacagctcaatttaatg
gagatagatgctattgacgacaaggagtttgacatccctcaagttgacacgcctccaaca
ctagagagtattctcaatgagcccgaggatgaggatgagcccttcgtcctggaggacaca
tgtcttctgaacacagaaaacatggatgtacattcctgcgagacgtcctcactcgccagt
tcagacagcggagaccgtgcccacctgaagaggaggaggaagccaatagagaccaatact
acagtgcacggctcagttctgagacacagtgtgctgaagggcatctcggctcagattgta
tctgccgctgacaaagtagatgctggcctgcccacggcagttactgtgtccagcgttatt
gctgtggggacctcacatggtctggctctggtgtttgatcagaaccaggccctgagactg
tgtctgggttccactgcgacaggggcggaatacggcgccgtgtcggccctcggtattaac
cacgactgcacacggctgctgtgcggctttgccaaaggacagattacgatgtgggatttg
gccaatgggaagctgctgcgcactatcacagatgcccacccacctgggacagccatttta
catgtcaagttcacagatctgccgacactggctgtgtgtaacgacagcgggggctctgtg
tttgaactctcattcaggagggtgatgggaatgaggacgtgcgagtcgaggtgtttgttc
agtggcagcaagggggaggtttgctgtgtggagccactacatacggcaccggagcttaaa
gaccatcccattacacaccactgcctgctggccatggcttcacttaccaagattttggtg
atcggattaaagccttcactgaaggtttggatgacgtttccatacggcaagacagaccct
gccagtgtgccacagctagcatggcagtttgttgctgcacagaaagcagtgaatcccatc
ttggctttctgcagaggagacactgtccacttcttactggtgaagaaggatgaatcaggg
actgttcatgtgatcaaacagcgacagctccaactcggctatgatctcatcagtctgaca
tggctgaactctcgcactctggtgctgatggacagcacagagaagctgcacgtggtggat
cgacccagtcaggaggagctggagaccttcgacctggcggagcttcagctggtctacaac
agcagccacttcaaatcgctcgccaccgggggaaacgtcagtcaggctctcgctttggtg
ggggagaaggcttgttaccagtctgtctacagctatggaggccaaatcatctacctggga
actaagtccgtccatgttatgaccctcaggaactggagagagcgtgtggatcatttcttg
aagcaggacaagtttgcagaggctctctctctggcctggtcctttcatgaaggcacggcc
aaagctgtactgggtttactcggcgaccctgccaagcggaagggagtgttggccgacaag
attgtggaaatattgttccagtatgtcgagcgttcactaaagaagtgtcccgaacagggc
aagatccagctgctggagcaacacttccaggacatgattcctgtcgtgatggattactgt
ctgcttctgcagaggacggacttgctatttaaccagatctactcacgtttggtggagaac
tctgtggccaagagcgtctttctagagagtctggaaccatacattctgagtgagaggatt
ggctgcttgaccgctccagttatgagggacctgcttagctactttcaggagaatggaatg
atggacagtgtggaggcctgtctggtacacatggacatcaccaacctggatatccagcag
gtggtgcagatgtgttgggagaaccagctgtatgatgccatgatgtatgttttcaacact
ggcatgaacgactacattagccctatggagaaactcttccaggtgatcggccctcctttg
cgtgaaggcaaacctctcacagatgaacaagtggtcatgggaaataagttgcttgtctac
attagttgctgtttagcgggacgggcgtatcctttaggagacattccagaagaccttgtg
cctcaagttaaaaatcaggtgtttgagttcctgattcgcctgcattcagtcgaggccact
tctgttgaggaggaggtctatccgtacatccggaccctgctgcactttgacactcgtgag
tttctcaacgtcctggcactgacgtttgaggacttcaagaatgacaaacaggctctggag
taccagcaaaggattgtggatattttactaaaggtgatggtggataattcagacttcacc
ccgtctcaggtgggctgtctgttcaccttcctcgcccgccagctggctaaaccggacaac
accctcttcgttaacaggaagctcttcgatcaggttctggagtttctgtgcagccctgat
gatgattccagacatacagagaggcagcaggtgctgttggagctactgcaggtgggaggc
atggtccagttcgacgagagtcaactccttgtcctggcagaaaaagctgagttctatcag
atctgtgagtttctgtacgagcagaagcacctgtatgatcaaatcatttcctgttatctg
aaagaccctctaagaaaggaggaggtttataactacatccataacatcctgtccatgcct
ggctacagcccagaggagaagcagaccgcgtggaacaaatccctggagcacgttaaggag
ctggttagcattaacccagctaaggcagctgagctggtgtgtggtcactttattagtgag
gtggaacccatcatcactgtacttgaggatgattatctgatcttccagttcctgaacaac
ttgctggatccgagggatggtcagaaacctgaagctgtgctcagtttgggtccggagcta
catgagcagctggtgggtttgatgtgtctctttagtcctcgccaggtcacaccgttcctc
cagacgtcccagaactaccgattggaagagaccgtccagataaccaagcagcatgagcta
cacgaggccaccgcctacctgctggagaaaaaaggagatgttcaaggagcttttcaggtg
ttactccagacactaaaggccaagctgcacacactggcccaggagagttgtgagaccact
gggacgaggtctgaggaagaggaggaggcagctgaagagcggagtttattggtcggggtg
gaggaagccctgagtgacatcatcgcgctgtgtcaccggagttcgcatggactcaaccag
ccgcagagagaggctctctggtttcctctcttggaggccatgatgtctccacagaggttc
ctcaagggccctgatgccaaacacacttctgaagcattaaaggaactaactatgaaggtg
ctgaacaacatgtccagcttcatcgccctgcccgctatcatccagcgcattttacaggac
cctgtatatggtaaagggaagttagctgagatccagggcctcattcttggcatgttggac
acttttaactacgaacagactctgttggagaccaccaccaacctgttgaactcggatctg
cactggtctctggctcacctgcgtaaagcagtcagccggggactccacccacgacaagac
cactgcaacatctgtctgcagcagtacaagagaagacaggagaacgaggaggagatcatc
atctttagctgtggtcacctgtaccattgccagtgtctgcagcggaaggaacagggggtt
ctgggtaaagacccaggcactacaggcgaccgtgttcactcgtggagctgttacaagtgc
acgtctagtcagggaactcgacccggagaccgactcattgctgagggaggccgagccaga
tccacctcgcttgcccagaccaaggtgacgtctgtccatcgaggaagcgctgctgaggct
catgggagaaaggagctgcaggaggtgacactagatgcacagcagatgcaggcatgggac
cagctgcgctgcatgtacagaggaccatccagattggcgatcctgacagaaatgaccagc
tcccacagcagtgaaaaggcaggcttgttaaaccccatccacccaggaacaggaactatc
tttgagagcgagaacctcagcctcaagctttctcccccgccattgatggaggaataa
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integrated database retrieval system
