Trichomycterus rosablanca: 134330296
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Entry
134330296 CDS
T09921
Symbol
setx
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134330296 (setx)
Enzymes [BR:
trn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134330296 (setx)
5.6.2.5 RNA 5'-3' helicase
134330296 (setx)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134330296 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
Viral_helicase1
UvrD-helicase
AAA_30
AAA_22
AAA_16
NAT10_TcmA_helicase
nSTAND3
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
134330296
NCBI-ProteinID:
XP_062867427
LinkDB
All DBs
Position
16:complement(6940415..6976254)
Genome browser
AA seq
2282 aa
AA seq
DB search
MDMCLWCTAPAERNVDLTAVLQRYCNGDLTQQEIQDANNDLSFCQECVVAYHDARESVPA
LHKWLWKLETARLLEVFREMLEVNLEDCDLFFVDNGLEQPVSRFSPEEFHNRLRFPLTEV
LKYPYLLCHRDLCEMVVKVLCKMEDMKNPLPVHDKYQGTYLLMVHPNEMVRRWAIDAARS
LGRVDRDSYYDLQEVFSCMFYIIELGISLDVPDQEDMYWSGRLHLLPSHLYDSKNKKNYW
LGICMLLMQLDSQAMDSLFMGPEKQSSITQCIINTLTACKREDDLDSDSFWPALHCFMII
LDRLGSKIWGQIEPLEAFQAITTASSYIAEIESIRQKTAGSRVKVEPDIDDDPVSCSQMV
YDCYAKERKSRSSEWALNRVDNGSNVIFEEMNCLVNILQSEMGQGMRVYGSTFLWFIPFV
RSVMELTVVHGNYIGEIIHYLEKNIDRDVLSGQRNTCDKVTEFFIRLLVDIIELHLSKDC
MVKVLYLTHIWVNVVVQCATLSGEFFRTRTPDRRGVSSTTPIFGSLTRTALTSIGAIRES
CLKLIHSLLKEGVPGGTITESAYFLKLLKKHMREAPLRGWILTRSESNDLEKCLKKVVQV
ISDRPGASHEIPCAPPTPPTDLPENFVSPLNFPVLEPSKHIETKNAEVRPSGGAQDYRFF
KDEPEWDDWNIRAKKEPQSPVQITEFCPAFEAHHLKPDLGKIQEIRSKLKEQDCKIQAIV
KGRSETDQVNLSSPSPQPSTSQSNTPNSARPSKSTKKKCDDDDDDEPLDVRMRRLKRSVR
SSSESEEDATLSRQTLVQGSKNSKIDSDSSVITISDDDVPTSDARSTKKDVCKPSSERNL
NQSPGRDYDDLSESQVFEFETQEDVASVWNDPFVDCPVETKKPKIVTSNKSVRWDGVDLV
SDMGNETEPVLDEDIETACRQAEEQISQQQQQQQPQKPASFSLVVPPKANSSSSDDQFNA
FVKPKSSMFTIPPIKAVLPEKKPNLCVPRNPLFIEALGRKVKRSISQDAAKPSTSSSTGP
SRTSSVPPVACPRPTPAIVPPKKFRKPIEPKSPAEQLGLKKKERKAFDLSQRSLDSLDEL
RSHGQNVHIKQKVKRVRRSSKPQPKLAEKVGKKMLASQDMQFFRLSRDKLQKPMSAPAVA
PRPAPPKSRHAIENADVSEEDADDFFLPCSQPDPDRRTDNEKAAMNVSSSDVNRASTSVN
STSKDSSSLPSPEGAVGNNGSAVRPPESKEETGGDDFDDEWTTLTQNEPTDMELCSQIEE
MEEEYGENFMIAANDQPSTSSISVPPKPPPTATTQNDHALFLKPDVPPVSQKKTTTKIYT
SSSRSASLAMEIGKPPTPLPAANIAKAKVARPPLAIPPPQPVQEFRPPPPPRTPQYPNPN
QFPRSTVSSNVPSPSYMPAHKSYPRPADQSERFDVKQMCDQDFLRQSILKWEFRMLDNYE
MYGSPDDLCPFPLKEVPTRFSSYKEYFHTFYPLLLINAFEEMAGEWLSGGKLELKLNIQR
IEYSKRTASASFTANLSPQQEMKQFYPKEEDLVLLQLPQNTGAYVDDGPCVSGMNYHFGY
VVKSNVISNGGGQPSTLNITIQTHGNVSSVNSQPVSCKLLGSLVSTMREFKALCLLHRHI
MTQPLLIPDIKFLAPCEEAVPNLDMPDYNRDQVKAINFGVAMVRRKEKTPKILLIHGPPG
TGKSKTIVGLLHRILSDGQAPASNHYGGSRRMRILVCAPSNAAVDNLMKKIIVCFKDGCR
DIRHPQGNCGDINLVRLGNEKTICKDLKLFSLDSQAKNRAEKAQQRSDMDIQRKREELDR
TIDTLSRQCAQTKQDGRLAEFQMLHAQKLNCCNERQNLSRQFKELYSKRQEVQKRLLHDA
HIICSTVSTSGSFVLQSAFRRLGHEPFSCVIMDEAGQAKEPETLIPLLYRCPSLILVGDP
EQLPPTVISTKAKELGYDQSLMARLWKSFHQSNPRSSPVVFLSLQYRMHPDICEFPSKYI
YGNNLKNDCDMAQKRCSPTWLFEPYRVFDVTDGTETKDKDSYSNRKEVKLVLLLLKLLWE
KQSTSVERQLMRIGVITPYNAQKRCILEALSKESKTQQVEVDTVDGFQGREMDCIIVSCV
RASNKSGSIGFVGSRQRMNVTLTRARYSLFILGHIRALKEQRDWGALIDDAAKRGTIIPT
HESKFHEAVRRVLKQPKLNRSSSYPQTRVPTPSATTSASHPDRQRDHHLPVRPSDPRLLE
ANRTVRERDRGNQSSGHARQGGHGGSNRSGYQSSGHSSHPSTELQRERYFPSTSEASRRH
RR
NT seq
6849 nt
NT seq
+upstream
nt +downstream
nt
atggatatgtgtctttggtgtacggctccggcggagcgcaacgtggacctcacggcggtt
ctacagcgctactgcaacggtgacctgacgcagcaagagatccaggatgcgaataatgac
ctcagcttttgtcaagagtgtgttgttgcatatcacgacgcaagagagagcgttcctgca
ctccacaagtggttatggaagttggagaccgcccgactgctcgaggtcttccgggaaatg
ctagaggtcaacctggaagactgcgacctctttttcgtggacaacggactggagcagccc
gtctccaggttttcacccgaagaatttcacaaccgattgagattcccgctgacggaggtg
ctgaaatacccgtacctgctgtgccaccgggacctctgtgaaatggtggtgaaggtgttg
tgtaaaatggaggatatgaaaaacccgctaccagtgcatgacaaatatcaggggacatac
ctactcatggtgcacccgaatgaaatggtacgccgctgggcaatagacgctgccaggtca
ctgggccgagtggacagagacagctattatgacctccaggaggtcttctcctgcatgttc
tacatcatcgaacttggaatctctctggatgttccagaccaggaagacatgtactggtca
ggaaggttacatctgctcccttcacatctctacgactccaaaaataagaagaattactgg
ctaggtatctgtatgttgctgatgcagctggactctcaagctatggactctttgttcatg
gggccagagaagcagtccagcattacccagtgcattattaacaccttaactgcctgtaaa
agagaagacgacctagacagtgattcattctggccagccttgcactgtttcatgatcatc
ctggaccgactgggctcaaaaatctggggacaaatcgaaccattagaagctttccaggcc
atcactacagcatccagctacatcgctgaaatcgaaagtattcgacagaaaacggcaggg
tccagggtgaaagtggagcctgacatcgacgatgacccagtatcatgcagtcaaatggtg
tatgattgttatgccaaggagcggaaaagcagatcctcagagtgggcactcaacagagtg
gacaatggcagcaatgtgattttcgaagagatgaactgtctagtcaatatcttgcagtca
gaaatgggccagggcatgcgtgtatacgggagcacctttctttggtttatacccttcgtc
cgctcggttatggagttgaccgtggttcatggcaattacatcggggaaataatccactat
ttggagaagaacatcgacagagacgtgctgtctggacagaggaacacttgtgacaaagtc
accgagttttttatccgactccttgttgatataatcgagctgcatctgagtaaagactgc
atggtgaaggttttgtatcttacccacatatgggtgaacgtggtggtgcagtgcgctact
ctgtctggagagttttttagaactagaacaccagacaggagaggagtctcctcaactacc
ccaatttttggcagcttaacaagaacggctctgacttcaatcggtgcgataagagaatct
tgcttgaagctgattcactcactgctaaaggaaggggtaccaggcggaacgatcacagag
tctgcttactttctaaagctccttaaaaaacacatgcgcgaggcaccgttaagagggtgg
atccttactagatcggagtccaacgatctcgagaaatgcttaaaaaaggtcgtgcaggtt
atatcggacaggcccggtgcgtcacacgaaataccatgtgctccgccaacaccgccgacg
gatcttccggaaaatttcgtttctcccttgaatttcccagtgttggaaccttcgaagcat
atagaaaccaagaatgcagaagtgcgcccaagtggtggtgcccaagattatcgtttcttt
aaagatgagccagagtgggacgattggaatatcagggcaaagaaggaaccccagagccca
gtacagattacagaattctgccctgcttttgaggctcatcacttgaaaccagatttggga
aaaatacaggaaatcaggtctaagctgaaagaacaggattgtaaaattcaggcaatcgtt
aagggacgttctgagactgatcaggtgaatttgtcatctccaagccctcaaccttctacc
tcgcaatctaatacgccgaattctgcccgaccgagcaaatctacgaaaaagaaatgcgac
gacgacgatgacgacgagcctctcgacgttcgaatgcgtcgtctgaaaagatccgtcagg
tcatccagcgagtctgaagaggatgcaactctatctagacagactttagtccaaggttct
aagaattcaaagatagacagcgattcaagcgtcattacaatttcggatgatgacgttccg
acgagtgatgccaggtcaaccaagaaagacgtctgtaaaccttcatctgagcgcaattta
aaccagagtccaggtcgagattacgatgatttaagtgaatcgcaggtatttgagtttgaa
acccaagaagatgtagcgtctgtctggaatgaccctttcgttgactgtccagttgagacc
aagaagcccaaaattgtcacctcaaacaaatctgttagatgggatggtgtggatctggtt
tccgatatgggtaatgagactgaacctgttctagatgaagacattgagacggcctgtcga
caagcagaggagcagataagtcagcagcagcagcagcagcagccacaaaaacctgcttca
tttagcttagttgtgccaccaaaggcaaacagcagcagctcagatgaccaattcaatgca
ttcgtcaagccaaaatcttctatgtttactatcccccctataaaagccgtactgcctgag
aaaaaacccaatctttgcgtaccccgaaaccccctttttatagaagcactgggacgaaaa
gtcaagagaagcatctctcaagatgcagcaaagcctagcacttcttcctccaccggtcct
tccagaacgtcttccgtgcccccggtcgcttgcccgcgacccactcctgccatagtccca
cccaagaagttccgtaaacccatcgagccaaaatcgccagcagagcaactgggcttgaaa
aagaaggagagaaaagcattcgatctttcccagcgttccctggactcattggatgagctc
aggtcacacgggcagaacgtacacatcaaacagaaggtgaagagagtacgccgctcaagc
aagccccaaccgaagcttgctgagaaggttgggaagaagatgctcgcctctcaggatatg
cagttcttcagactgagccgcgacaagctccagaagccgatgtctgcccccgcggtggcg
cccagacccgccccacctaaatcgagacacgcaattgaaaatgcagacgtctcggaagag
gatgcggacgacttcttccttccgtgctctcaaccggatcctgacaggaggacggataat
gaaaaggccgccatgaacgtctcgtcatcggacgtcaacagagcgagtacttcggtcaac
agtacgagtaaagactccagttcattgccgagccctgagggtgctgttggaaataatggt
tctgcggtacgcccaccagaatcgaaggaagaaaccggtggcgatgactttgatgatgag
tggacaacccttacacaaaacgaacccactgacatggagctttgttctcagatagaagaa
atggaggaggaatacggtgagaatttcatgatcgcagcaaacgaccaaccaagtacttca
tccatctcagtgcctcctaaacctcctcccactgctaccactcagaacgatcacgcgtta
ttcttaaagcctgacgtgccacctgtatctcagaagaaaacgaccacaaagatttacacg
tcgagttcccgtagcgcctctttggccatggaaataggaaagccgcccacccctttgcct
gctgccaacatcgctaaagctaaagttgcacgtccaccactggcaatcccgcctcctcaa
cccgtgcaagaattccgtccacctccgccacccagaacccctcagtaccctaatcctaac
cagttccccaggtcgaccgtttccagcaacgtaccatcaccttcctatatgcctgctcat
aaatcctatcccagaccagcggatcagagtgagagatttgacgtgaaacagatgtgtgac
caagactttttgaggcaaagcatactgaaatgggagttccgcatgcttgacaattatgaa
atgtatggctctccagatgacctgtgtccctttccccttaaggaagtaccaacgaggttc
tctagctacaaggagtacttccacaccttctacccacttttgctcatcaatgcgtttgaa
gagatggctggtgaatggctaagtggtgggaaacttgagcttaagcttaacatccagaga
atcgaatacagcaaacggactgccagcgccagtttcacagcaaacctgagccctcagcag
gaaatgaagcagttctatcctaaagaggaagacctggtgctgctccagctgccgcagaac
accggcgcatatgttgacgatgggccgtgcgtttctggaatgaattaccactttggctat
gtggtgaaatccaacgtgatcagtaatggaggaggtcagccctcgacattaaacattaca
atccagacacatggaaatgtctcttcggttaactcccagccagtatcctgcaagctgttg
ggttcactggtcagcaccatgagggaattcaaagcgctgtgcttgttacacaggcacatc
atgacacaaccacttctcatacctgacattaagttccttgcaccctgtgaagaggccgtg
ccaaacctggatatgcctgattataacagagaccaggtcaaagcaattaactttggtgtt
gccatggtgagaaggaaagagaagactccaaagattttgttaatccacggacctccagga
actggcaagagcaaaaccatagtcggccttctgcacagaattctctcagatggtcaagct
ccagcatccaaccattatggcgggtctcgacggatgcgcattttggtctgtgcgccctcc
aatgctgctgtcgacaatctgatgaagaaaattattgtctgctttaaagatgggtgccga
gacattcgtcatccccaaggaaattgtggcgacatcaacctggtgcgactggggaacgag
aaaaccatctgtaaagatcttaaactcttcagccttgacagccaagccaaaaacagagca
gagaaagctcagcagaggtcagatatggatatccagagaaagagggaagaactggacagg
accattgacacattgtctcgtcagtgtgcacaaacgaaacaagacggcagactggcagag
tttcaaatgctccatgctcagaagttaaactgctgtaacgaaaggcagaatcttagccga
cagtttaaagagctatacagtaaaagacaggaggtgcagaaacgtctgctgcatgatgct
cacattatctgttccaccgtgagcacgagcggtagcttcgtgctccagtcagccttccgc
cgtctaggacatgaacccttcagctgcgtcatcatggatgaggcaggacaagctaaagaa
cccgagaccctgattccattgctgtatcgatgcccctccctcattctggtgggtgaccca
gagcaacttccaccaaccgtcatctctacgaaagccaaagaactcggttatgaccagtcc
ctgatggctcggctatggaagagctttcatcagtcaaaccctcgttcatcccccgtagtc
ttcctcagcctccagtaccgcatgcacccggacatctgcgagttcccttccaaatacatc
tacggcaacaacttgaaaaacgactgtgatatggctcagaagcggtgttctcccacttgg
ctgtttgagccttacagagtgtttgacgtgaccgatggaacagagaccaaagacaaagat
tcatacagtaatcgaaaagaagtaaagctggtgttgctgctgctgaagctgctctgggag
aagcagtcgacgtccgtggagaggcagttgatgcgcattggtgttattacaccttataac
gcccagaaacgctgcattttggaggctctcagcaaagaaagcaaaacccaacaggtggag
gtggacactgttgatggtttccagggccgtgaaatggactgcatcattgtgtcctgtgta
agagccagtaacaaatcaggcagtattgggtttgttggaagtcgtcagaggatgaacgtg
actctaaccagagccagatacagtctgttcatactgggacatatacgtgcactcaaggag
cagagggattggggtgctctaatagatgacgcagccaagcgcggaaccatcataccaaca
cacgagtccaaattccacgaggccgtgaggagggttctcaaacagcctaaactcaaccgt
agttcctcctaccctcaaactcgtgtccctaccccctccgcgactacgtccgcgtcacat
cctgaccggcaaagagaccaccacctacccgtcagaccttcagaccctcgcctgttagag
gctaaccggacagtcagagaacgggaccgagggaatcagagttcgggacatgctaggcag
ggcggtcacggcggttcaaaccgttctgggtaccagagctccggccactcgtcgcatccg
tctacggaactgcaacgtgaacgttactttccatccacgtcagaggcatccaggaggcac
aggagatag
DBGET
integrated database retrieval system
