Trichomycterus rosablanca: 134330479
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Entry
134330479 CDS
T09921
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03440
Homologous recombination
trn03450
Non-homologous end-joining
trn04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
134330479 (rad50)
03450 Non-homologous end-joining
134330479 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
134330479 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trn03032
]
134330479 (rad50)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134330479 (rad50)
DNA replication proteins [BR:
trn03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
134330479 (rad50)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
134330479 (rad50)
BRCA1-C complex
134330479 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
134330479 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
AAA_29
AAA_22
AAA_16
AAA_13
Motif
Other DBs
NCBI-GeneID:
134330479
NCBI-ProteinID:
XP_062867701
LinkDB
All DBs
Position
16:13545547..13601819
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQVITFFSPLTVLVGPNGAGKTTIIECLKYVTSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGEPLAVQRSMQSTQKGKKAEFKTLEGVITR
IKHGEKVSLSSKCAEIDREMISALGVSKAVLNHVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKVLESLRQLRLKQSNTVKTCQTELKYLKQNKEKAEEIKQLLSTKEAQLAASKES
VQRIESQIDPMENRLNDIDDNLGKVMKLDNDIKALDSRKKQMEDDNQELQEKMEQVFQGS
DEQLQEMYQNHQRTVREKERKLTECQRNLERAGRECQRMNHLKSDLLVEQGRLQMEADRH
ALHLKNRDVQVKSLGSYLELEGYDRTPFNERQLQSFHRQVKERQDQETEALNRVILEMQE
KEAQKQQSTDEIRDKKTGLERTIELKKDIQAKKQQELKNIKSDLQKLEGSSTRLQELESE
LAKAERELNNAVQSSTVDSLKTEVQELQREKTELDQTQRRLDQEMETLNTHTTARTQMDM
LKKDKMDKEDQVRKIKSRHSEDLVSLLGHFPNKRELEDWIHSKSKEINSIRMKLSKLIKE
LASKEQNKTHCTAEIRHKEQQLTSFEEKLFNVCGSQDFESDLAKLQDDLEKCSKQRAMLA
GATAVYTQFISQLTEEGEPCCPVCQRIFPSEAELQDVINDMQSKLRLVPDKLKSTEQDLK
RKERKRDDMMALKPVRQSLAELQEKELPELRNKLQSVNREIEKLKRDIEEQESLLSMLTS
EEDTAKACLQDISLMDRYQMDLKDVERKIAQHAAKLQGVDLNRTMQHVSQEKQEVQHRLD
TTCSKMELKRKLIQDQQEQIQTLKSSVNEIRSVKLQISSNMQKQQQLEEQCVEFSAEIQA
LHREIRDAREQASPLAATLEKLQQEKQELIESRRTKQAEGQEKINSIKERIKNLVAVEKE
ITRYIEEGKDDYKEQKEAELQDINTQLLEAEKQREKINKDIGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVTKKREVLLIEMGNMQVMELRTERRELERKVEDLKRNRSVALGRQKG
FEEEILRFRKELREDQYCQAEERFRDKMIVMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGVKRRTYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVDIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYVEHFYRIKKNQDQCSEIARCSIKTLNTYLR
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaatagagaagatgagcatccttggagtgaggagctttggtgtggaagacaaa
gacaagcaagtgataacattcttcagtcccctaactgttctggtcggacccaatggagcg
ggcaaaacgaccatcattgagtgccttaaatatgtcacttctggagattttccacccgga
agcaaaggaaatactttcgttcatgatcctaaggatgcccatgaaactgatgtccgtgct
cagattcgcctgcagttcagagacgtcaacggagagccactggctgttcagcgctccatg
cagagcacacaaaagggcaaaaaagctgagtttaaaactcttgaaggagtcatcaccaga
ataaagcatggagaaaaggtcagtctgagctcaaagtgtgcagaaatagaccgtgagatg
atttcagctctgggagtttccaaagcagtccttaatcatgttatattctgccatcaagag
gagtctaactggcctttaagtgaaggaaaagcccttaagcagaaatttgatgagattttc
tcagcaacaaggtacattaaggtgctggaaagtcttcggcagcttagactgaagcagtcc
aacactgtcaagacctgtcagacggagcttaaatatctaaagcagaacaaggagaaggct
gaggagatcaagcaactgctgtccactaaagaagcacagctagcagcatccaaagagagc
gtgcaacgaattgaaagccagattgatccaatggagaaccggttaaatgacattgatgac
aacttaggaaaagtcatgaagctggataatgacatcaaggctctggacagcaggaagaaa
cagatggaagacgacaatcaggaactacaagagaagatggaacaggtgtttcaaggatca
gacgagcagctgcaggagatgtaccagaaccaccagcgcacagtgagggagaaagagagg
aaactgactgaatgccagcggaacctggagagggcaggtcgtgagtgccagaggatgaat
caccttaaatcagacctgctagttgaacagggacgtcttcagatggaagcagaccggcat
gctctacatttaaagaacagagatgttcaagtaaagtctcttggttcttacttggaattg
gaaggctatgacagaactcccttcaatgaaagacagctccagagcttccaccgacaggtc
aaagagagacaagaccaggagacagaggctctcaacagggttatacttgagatgcaagaa
aaggaagcacaaaagcagcagagcactgatgagatacgggataaaaagacaggcttggag
aggaccattgagctgaagaaggacatacaggccaagaaacagcaggagttgaagaacatc
aagtcagacctgcagaaactagagggctcttccaccagactgcaggaacttgaaagtgag
ctggcaaaagcggagcgtgagctaaataatgctgtgcagagttccacagtagacagtctg
aagacagaggtgcaggagctacaaagagagaagactgaactggaccagactcagaggaga
cttgatcaggaaatggagacccttaacacgcacaccacagcacgcacacagatggacatg
cttaaaaaagataagatggataaagaagatcaggtgaggaagatcaagtccaggcacagt
gaagacttggtttctctgcttggccatttccctaacaagcgggaacttgaggactggatt
cacagcaaatctaaagagatcaactccataaggatgaagctgagcaagcttattaaggag
ctggcatccaaagaacagaacaagactcactgtacagctgagattcgacacaaagagcag
cagctgaccagcttcgaagaaaagctcttcaacgtgtgtggcagtcaggactttgagtca
gatcttgctaagcttcaggatgacctggagaagtgctccaagcagagagccatgctggca
ggtgccactgcagtgtacacccagttcatcagtcagctcaccgaggagggtgagccgtgt
tgcccggtgtgtcagcgcatcttcccctcagaggcggagcttcaggacgttataaacgac
atgcagtccaaactgcggctggtcccagacaagctgaaaagcacggagcaggacctgaaa
aggaaggagcgcaagcgggatgacatgatggccctcaaaccagtcaggcagtctcttgca
gagctgcaggagaaagaactgccagagctgaggaataagctacagagcgtaaaccgggaa
atagaaaaactgaagcgagacatcgaggagcaggagagtctgctgtccatgttgacgtct
gaggaagacaccgccaaggcctgtctgcaggacatttcgctgatggaccgctaccagatg
gacttgaaggatgtggagaggaagatagcgcagcacgcagctaaacttcagggagttgac
ttaaaccgtactatgcagcatgtcagccaagaaaaacaggaggtccagcatcgcctagac
accacctgcagtaagatggagctgaagcgtaaactgatccaggaccagcaggagcagatc
cagaccctaaaaagcagtgtgaacgagatccgctctgtgaaacttcagatttccagtaac
atgcagaagcagcagcagctggaggagcagtgtgtggagttcagcgctgagatccaggcc
ctgcacagggaaatacgggatgcaagagagcaggcctcccctctggcagccactttggag
aagctccagcaagaaaagcaggagctgattgagagcaggaggacaaagcaagcagaaggc
caagagaagattaattcaatcaaggaaagaataaaaaatctggttgcagtggagaaagaa
attaccaggtacattgaagagggcaaagatgactacaaggagcaaaaagaggctgaacta
caggacataaatacccagctgctggaagctgagaaacagcgagagaagatcaacaaggat
ataggcaatattcgacaagatatagacactcagaaggtccaagaacgttggcttcaagat
aatttgacgttaagaaagcgtgtggaggagctgaaggaggtgactaaaaagagagaggtc
ttacttattgagatgggcaacatgcaggtcatggagctacgcactgagcggcgagaactg
gagcggaaagttgaggacttaaagaggaatcgcagtgttgctttgggtcgtcaaaagggc
tttgaagaggaaatcctgcgctttcgcaaagagctccgtgaggaccagtactgccaggct
gaggaacgctttcgggacaagatgatagtcatgagaaccactgagctagccaacaaagac
ctggacatctactacaaagcattggaccaaacaattatgaagtttcacagtatgaagatg
gaggagattaacaaaatcattcgggacctgtggaggagcacatatcgtggacaagatatt
gaatatgtggagatccggtctgatgtggatgagaatgcctcagctggtgtgaagagaaga
acctataactacagagtggtgatggtcaaaggagacacagctttagacatgcgtggacgt
tgcagtgctggacaaaaggtattagcttcacttatcatccgactggctttggctgaaaca
ttctgtttgaactgtggcatcctggccctggatgagcccactaccaaccttgaccgagaa
aacattgagtcactggcccatgccttggtggatatcatcaagagtcgctctcgacagcgc
aacttccaactgcttatcattacccatgatgaagactttgttgaactcctcggtcgatcc
agctatgtggagcacttctacagaatcaagaagaaccaagaccagtgttcagagatcgcc
agatgcagcatcaagactcttaacacctacctgcgctga
DBGET
integrated database retrieval system
