Trichomycterus rosablanca: 134330761
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Entry
134330761 CDS
T09921
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
trn
Trichomycterus rosablanca
Pathway
trn03320
PPAR signaling pathway
trn04148
Efferocytosis
trn04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
134330761 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
134330761 (rxraa)
03320 PPAR signaling pathway
134330761 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134330761 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
trn03310
]
134330761 (rxraa)
Transcription factors [BR:
trn03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
134330761 (rxraa)
Nuclear receptors [BR:
trn03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
134330761 (rxraa)
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GFIT
Motif
Pfam:
zf-C4
Nuc_recep-AF1
Hormone_recep
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
134330761
NCBI-ProteinID:
XP_062868068
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Position
16:2920214..3020144
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AA seq
504 aa
AA seq
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METKPFLSLGFLKPQCSLAPPSQRGRSGESCSCFTGMCPLHQRRISTDSHVTSSPLSSPT
SYRPTHPHLLSPSSIGASGSLHSPISTLSSSMNGLGSPFSVISSPMGPHSMASPGMGYGP
SVSPQMLQLNSPMNSVSSSEDIKPPVGLNGMMKMPAQSTGMPISLTKHICAICGDRSSGK
HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKNCVIDKRQRNRCQYCRYQKCLAMGMKREVL
LHTAVQEERQRAKDRNENEVESSSSANEDMPVEKVLEAELAVEPKTETYIETNLGVPSNS
PNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV
KDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDS
KGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRSKCTSLDRWFRGSDVRLYPHCHCKCN
SCCLVEVEEHTGHSMSLHMWYDSL
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggagaccaaaccgtttttatcactggggtttctgaagccccagtgctcgttggcgcca
ccgtctcagagaggccgctcgggggaatcctgctcctgtttcactggcatgtgtccactc
catcagcgccgaatctccacagactctcatgtgacctcgtctcctctgagctctcctacg
tcttaccgacccacgcaccctcatttactgagcccgtcctccatcggggcctccggatcc
ctgcactctcccatcagcacgctcagctcctcgatgaacggcctgggctcacccttctcc
gtcatcagctcgcccatggggccgcactccatggcctcgccggggatggggtacgggccc
agcgtaagcccacagatgttgcagttaaactcgcccatgaactccgttagtagctcagaa
gacatcaaacctccggtgggcttaaacggcatgatgaagatgccagcgcagtccaccggc
atgcccatctccctcaccaaacacatctgtgccatctgcggcgaccgctcctccggtaaa
cactatggcgtctacagctgcgagggctgtaagggattctttaagaggacggtgcggaaa
gacctgacctacacctgccgagacaacaagaactgcgtcatcgacaagcggcagagaaac
cgctgccagtactgtcgctatcagaaatgcctggccatgggcatgaagagagaagttctt
ttgcacacagccgttcaggaggagcgtcagcgagccaaggaccgaaatgaaaacgaagtg
gagtccagcagcagcgccaacgaagacatgcccgtagaaaaggttctggaggccgagctg
gccgtcgagcccaagaccgagacctacatcgagactaacctgggcgtgccgtccaactcg
cccaacgatcccgtcactaatatctgccaagcggccgataagcagctcttcaccctggtg
gagtgggccaagaggatcccacacttctccgaactgcctctggacgaccaggtgatcctg
ctgcgggcaggctggaatgagctgctcatcgcatcgttctcacatcgctctatagctgta
aaggacggcattctgctggccactgggctccacgtacacaggaacagcgcccacagtgct
ggtgtgggagccatattcgacagggtgcttacagagttggtgtctaagatgagggacatg
cagatggataaaacagagctgggctgcctgcgagcgatagtactctttaatccagactcc
aaaggcttgtcgaaccccggcgaggtggaagctctgagagagaaggtgtatgcgtctctg
gaggcctactgcaaacagaagtaccctgaacaacctgggaggagtaagtgtaccagcttg
gacaggtggttcagagggtcagacgtcaggctttatcctcattgccactgcaagtgcaac
tcctgctgtctggtcgaggtggaggaacacacagggcacagcatgtctctccatatgtgg
tacgactctctgtaa
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