Trichomycterus rosablanca: 134330935
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Entry
134330935 CDS
T09921
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
trn
Trichomycterus rosablanca
Pathway
trn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134330935 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134330935 (nup98)
03036 Chromosome and associated proteins [BR:
trn03036
]
134330935 (nup98)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
134330935 (nup98)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
134330935 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
CAF1-p150_C2
Motif
Other DBs
NCBI-GeneID:
134330935
NCBI-ProteinID:
XP_062868292
LinkDB
All DBs
Position
16:19197233..19218354
Genome browser
AA seq
1819 aa
AA seq
DB search
MFNKSFGTPFGGGTGGFGTSSTFGQQNAGFGATGGFGASAFGTTNNTGGLFGGAQNKPSG
LFGSNTFSQPVTSSTSSGFGFGATSGTSNSLFGTTNTPGGGLFSQPNNAFGANKPTSFGT
FGTSTSSGGLFGNTNTTTNPFGSTSGSLFGTSSFTATQPGTTIKFNPPSGTDTMVKSGVT
TNINTKHQCITAMKEYESKSLEELRLEDYQAGRKGPSNPMAANTGSLFGVTPAATASTAT
GLFGSSGGGFSFNQNKTSFNTGTGGFGTSTGGLFGQPQPQQQQQQQQQQQQQQQANSHFK
PFGQATTTQNTGFSFGGINTMGQANTSSMGLFGNTAASQAGGLFGNTANTSTATGFGTGT
GLFGQPNAGFGNVGTQNLFGNKPAGFGTTTTSAPSFGTGTGLFGNKPTLTLGANTNTSTF
GFGANTTGGLFGNKTGPGTIGTGLGAGFGAGVGTGQTSLFGNNQNKLGSGLGTTGIYGAP
SFNTGSSALNFGAPQQPVALTDPNAVAQQAVLQQQISALAYAPFGDSPLFRNPLSDPKKK
EERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALTSSGSSKSQLFDGLDDDEPSLTNG
AFMPRKSIKKLVLKNLNGSSLYGSPLNQEADDLNSPSEYPQNGLSLRLDADETQDVETEG
GAEDDLQVSKFYTNPIAKPIPHNQPSPSLQDTITELNMRKANACNGLELSSEEISLGDDS
VQEDRDDDLEAQKPPHPAGIVLTRVGYYTIPSMEELGKMLNENGECIVENFTVGRKGYGS
VFFPGKVNLTDLNLDETVHFRRKEVIIYPDDKDKPSVGEGLNRRAEVTLDGVWPNDKTSC
TPIKSPQRLSELNYEERLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLQDSDEEEEG
PPTKTDLKKLKMALPAGLQQIPLSQQQQLAPQAQSTAVLELLSRVSELDSDMADFTQEPP
ADGLLCEEDESVLEDDTRMAVRAETPAELEPISASSQIASSLGINPHTLQIMKASLFMGD
DDCDLFHEQLPSKVLEEVASPRVLLGKSQGRLSVGGLLQSKFTSGGGLFGQLPELPFGTS
PQKLSKPALPESPWPSLGPSILLPPPVPEVTLKTVGARRLGGPVPLENSITMGKGRLLMD
SALYMGRSFRVGWGPNWTLVHCGDSLSTAPESKGQTTDTMGFGFLPKPTKSRQITESPFK
VHIEQVVGMEPKKTKESLAVYQQPLEIELQHSFISTEEVCPFICPENGLDALHDYAKWIV
EANNETGPENVLLGHWQQVWLLCAALWGRLGNQDLEAEQGCKAYQEQLARRRSFSRWLAE
SAAYRIQEEVCQAQGHNHVSAIFSYLTGCCISEACKLAQKSGDHRLSLMLSQAAGSHLSR
DLLGLQLADWHGMQTDSFIQEERLRIFTLLAGKPVWESTDCYINVCSELDWKRCLAVHLW
YMLPPTASVADALAKYEAAFQSLEEGTNYACAPLPPYMDDLELLGMDAMEDTDSKKTLYD
ICFHLLKLYSDKHYSMQQLLDPSTVTADRLDYRLCWHLWNVLQQLNYTHLSEPCQGILHA
SYAAQLESVGLWEKAVFVLLHIPDPTLREHAVREMLNQHCVLDNTEESTEKEHFLVNKLL
IPVQWIHKSKAIRARREGDKHLEALHLFRAGEWNHCHRLVIQHLASDCIINDNHNYLMEF
LEGLALPERSAQIQDWDTSGRVYRDYIHVIQTLQAIQQMDSPGYELERLHSDVTSLCSRI
ELLPCSKAKDRLAQSEVAKRLANILRVVLSLHQGTPDLRQIPLCHLAPHIGRLPMPEDYA
LEELRSLTQSYLREYITSH
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgtttggtactccctttgggggaggaacaggaggatttgggacttcg
tccacatttggacaacaaaacgcagggtttggagcgactggtggttttggtgcctctgct
ttcgggacaacaaacaacactggaggtctttttggaggagcacaaaacaaacctagtggg
ctctttgggtccaacacatttagtcaacctgtcacctcttcaaccagcagtgggtttggg
tttggtgctacaagtggtacctccaacagcctctttggaactaccaacacaccaggtgga
ggtcttttctcccagccgaacaatgcatttggagccaacaaaccaacctcatttgggacc
tttggtactagtaccagcagtggtggcctgtttggcaataccaacaccaccaccaatcca
ttcggcagtacctcggggtccctgtttggcacatcaagctttactgccacccagcctggc
acaaccattaaatttaatccaccaagtgggaccgacacaatggtaaaaagtggcgtgacc
accaacatcaacaccaaacatcaatgcattacagccatgaaggagtatgaaagcaaatcc
ttagaggaactgaggttagaggactaccaggcaggcagaaagggtccctccaacccaatg
gcagccaacacgggcagtctgtttggggttacaccagcagcgactgccagcactgctacc
ggcctgtttggctcctcaggtggcggcttcagcttcaaccagaataagacctcctttaac
actggtacaggaggctttggtacaagcactggtggtttgtttggccagccgcaaccgcag
cagcagcagcagcagcagcagcagcagcagcagcagcagcaagctaatagtcactttaag
ccatttggtcaggccaccacaacgcagaacactggcttttccttcggtggcataaacacc
atgggtcaggccaacaccagcagcatgggcctgttcgggaacactgctgcctcacaggca
gggggactgtttggaaacacagccaatacaagcacagccacaggtttcggcacaggcact
gggctgtttgggcagcccaacgctggctttgggaatgtgggtacacagaacctgtttggt
aataagcccgctgggtttggtaccaccacaaccagtgctccctcatttggcacaggcact
ggcctgtttggcaacaagcccacactcactctgggcgctaacacaaacacttccaccttt
ggttttggagcaaatactactggaggtctgtttggaaacaaaactggccctggcacaatt
ggaacaggtctcggagcaggttttggagcaggtgttggcacagggcaaacatctctgttt
ggaaataatcagaacaagctgggctctggtctgggcacaacagggatatatggggctcca
agcttcaacacaggatccagcgcactgaattttggcgcaccgcagcaacctgtcgccctg
actgatcccaatgctgtggcccagcaagctgtgctacaacagcaaatcagtgcccttgcc
tatgcaccttttggagattcacctctttttagaaacccgctttctgaccccaagaagaaa
gaggagcgtctgaagcctacaaatccagctgcccagaaagccctgacaaccccgacacat
tataaactgacccctcgtcctgccacacgtgtacgcccaaaggctctgacctcttcaggc
tcttcaaagtctcagctctttgacggcctagatgatgacgagccttctctcaccaatgga
gcttttatgcctaggaaaagcataaagaagctggtgttgaagaatctgaatggcagcagt
ctgtatggcagcccactaaatcaggaggctgatgacttgaactctccttctgaataccca
cagaatggcctcagtctcagattagatgcagatgaaactcaagatgttgagacagagggt
ggagcagaagatgatctgcaagtctctaagttctacaccaacccaattgctaagccaatt
ccacataaccagcctagcccttcactgcaagataccatcactgagctgaacatgaggaaa
gccaatgcctgtaatggtctggagctcagcagtgaggagatctctctgggagatgattct
gttcaggaagacagagatgatgaccttgaggcccagaagcctcctcatcctgctggtata
gttctcactagagtgggctactacaccatcccttccatggaggagctaggaaagatgctg
aatgaaaatggagagtgtattgtggagaacttcacagttgggaggaaaggctacgggtca
gttttcttccctggcaaggtaaatttgacagacttgaatctggatgaaaccgtgcacttc
agacgaaaggaggtaatcatctaccctgatgacaaagacaaaccatccgtcggggagggt
ctcaacagacgagcagaagtgactcttgatggtgtttggccaaatgacaaaacatcctgt
actccgatcaaaagtcctcagcgcctgagtgagttgaactatgaggaacgactagagaat
gcatcccgcaagcaaggtgctcgctttctggaatacagacctgagactggctcctgggtg
tttgaggtggcccacttctccaaatacggcctgcaggactctgatgaggaggaggagggt
cccccaactaagactgacctgaagaaactcaagatggcccttccagctggactgcagcag
attccactgtcccagcagcagcaattggcgccacaagcccagagtacagcagtgctggag
cttctgagccgcgtgtcggagctggacagtgacatggcggactttactcaggagccgcca
gcagatggattgttgtgtgaggaggatgagagcgtgctggaggatgacaccaggatggct
gtaagagcagaaacacctgctgaacttgagcccatctctgcctccagccagattgcctcc
tcgttagggatcaatcctcatacccttcagataatgaaggcatccttgtttatgggcgat
gatgactgtgacttgttccatgagcaactcccttcgaaagtcttggaggaagtggcatct
ccccgggtgttacttggtaaatcccagggcagactgtcagttggtggccttctacaaagc
aagttcacctcaggtggaggcctttttggacagctgccagagttaccttttggaaccagc
cctcagaagctaagcaagccagcattgccagagtccccttggccctcgctgggcccttca
atccttcttcctcctccagtcccagaagtcacactaaagactgtgggcgcacgcagactt
gggggtccagtgcctcttgagaactcgataaccatgggcaaaggccgtctgttgatggat
tcagctctctacatgggtcgctcatttagggtgggctgggggcctaactggacactggtg
cactgtggagattctctcagcacagcaccagaatcaaagggacaaaccacagacaccatg
ggctttggcttcttgcccaaacctacaaagagcagacaaattactgagagcccctttaaa
gttcacattgaacaggtagtaggaatggagcccaaaaagacgaaagagagcctggcagtg
taccagcagccgcttgagattgagctccaacacagttttattagcacagaggaagtctgc
cctttcatctgtccagagaatggattggatgccctgcatgattacgccaagtggattgta
gaggccaacaatgagactggacctgaaaatgtcctacttggtcactggcaacaggtgtgg
ctgctgtgtgctgctctttggggccgactgggcaatcaggacctggaggcagaacaaggt
tgcaaggcatatcaagaacagttggcacgaaggcgaagcttttctcgctggttagccgaa
agcgctgcctaccgcatccaggaggaagtttgtcaggctcagggacacaatcatgtcagt
gccatttttagctatctgactggctgctgcataagtgaggcctgcaaactagcacagaaa
agtggagaccatcgtctgtcccttatgctgtcccaagcagcgggctctcacttaagcaga
gaccttttgggtctgcagttggcagactggcacggaatgcagactgactcgtttattcag
gaggagagactgcgcattttcactttgcttgcaggcaaacctgtttgggagtcaacagac
tgctatataaacgtgtgttctgagctggactggaagcgctgtttggctgtgcacttgtgg
tacatgctgcctcccactgcttcagtggctgatgctcttgccaaatacgaggctgctttt
cagagcttagaggagggaacaaactatgcttgtgcacccctgcctccttatatggatgac
ttggagctgctgggtatggatgcaatggaagacacagattctaaaaaaactctgtatgac
atctgctttcacctgctcaaactgtacagcgacaagcactatagcatgcagcaattgctg
gatcccagcacagtgacggccgaccgactggactacagactgtgctggcacctgtggaat
gtgctgcagcaattaaattatactcatctgtccgagccctgccagggcatcctgcatgcc
agctatgctgcacagcttgagagtgtgggcttgtgggagaaggcagtttttgttctgctg
cacatccctgacccaacacttcgtgagcatgctgtgcgagagatgctgaaccagcattgc
gttctggacaacactgaggaatcaacggagaaggagcacttcctcgtcaacaagctgctc
atccctgtgcagtggatccataaatccaaggccattcgggcacgcagagaaggagacaaa
catttggaagcactgcacctcttcagggctggtgaatggaatcactgccacaggctcgtt
atccagcacctggcttcagactgcatcatcaacgataatcacaactacctgatggagttc
ttggaaggtttggcattacctgagcgcagtgctcagatccaggactgggacacgtcaggt
cgcgtctacagggactacatccatgttattcagacccttcaagccattcagcagatggac
agtccaggatatgagctggagcgactacacagtgatgtaacatctttgtgcagcaggatt
gaacttcttccctgttccaaagccaaagacagacttgcccagtcagaagtggccaagcgt
ttggctaacatcctgcgggtggtgctaagtcttcaccagggaacccccgaccttcgtcaa
atccccctgtgccatcttgcaccccacattggacgcctgcctatgcctgaggactacgct
ctggaagaactgcgcagccttacccagtcttatttgcgcgagtatatcaccagtcactga
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integrated database retrieval system
