Trichomycterus rosablanca: 134331099
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Entry
134331099 CDS
T09921
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
trn
Trichomycterus rosablanca
Pathway
trn03018
RNA degradation
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134331099 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
134331099 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134331099 (lsm4)
03041 Spliceosome [BR:
trn03041
]
134331099 (lsm4)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134331099 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
134331099 (lsm4)
Spliceosome [BR:
trn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
134331099 (lsm4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
134331099
NCBI-ProteinID:
XP_062868433
LinkDB
All DBs
Position
17:complement(11302196..11312241)
Genome browser
AA seq
142 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMP
GTGRGQQQDKKPGKPQGVKNQQ
NT seq
429 nt
NT seq
+upstream
nt +downstream
nt
atgcttccattatctttgttaaaaacagcgcagaaccacccgatgctggtggagctgaag
aatggggaaacgtacaacggacatttggtcagctgtgacaactggatgaacattaattta
agagaagtcatctgtacctctcgggatggagataagttttggaggatgcctgaatgctac
atcagaggaagcactattaaatacctgcgaattcctgatgagatcattgatatggtgaaa
gaggaagtcgtttctaagggccgcggtagaggtggcatgcagcagaataaacagcagggg
aagggccgaggaggcggagctggccgaggagtgtttggtgggcgtggaagaggcatgcca
ggcactggccgtgggcagcaacaagacaaaaaaccaggaaaaccacagggtgtcaaaaac
cagcagtaa
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integrated database retrieval system
