Trichomycterus rosablanca: 134331348
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Entry
134331348 CDS
T09921
Symbol
copb1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134331348 (copb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
trn04147
]
134331348 (copb1)
Membrane trafficking [BR:
trn04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
134331348 (copb1)
Exosome [BR:
trn04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
134331348 (copb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatamer_beta_C
Coatomer_b_Cpla
HEAT
HEAT_2
Cnd1
HEAT_EZ
Arm
MMS19_N
Motif
Other DBs
NCBI-GeneID:
134331348
NCBI-ProteinID:
XP_062868792
LinkDB
All DBs
Position
17:complement(18350641..18378434)
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AA seq
953 aa
AA seq
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MTAAENVCYTLINVTSDAEPPSEVSLKTDLEKGEIKAKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGKLLQEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVHTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI
VLDRLIELKEHPTHERVLQDLVMDILRVLTTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVTEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDTNEAAAADV
LEFVREAIQRFDNLRPLIIEKMLEVFHSIKAVKIFRGALWILGEYCSTKDDIQSVMTEVR
RSLGEIPIVENEIKKEAGELKPEEEVSAAPAQKLVTEMGTYATQSALSSSRPSKKEEDRP
PLRGFLLDGDFYVAASLATTLTKVALRYLVIVTDKKKQNSFVAEAMLIMATVLHLGKSSL
PKKQITDDDVERISLCLKVLAECPPLMNDIFNKECRKSLSHMLTVRLEEEKLSQKKESEK
RNVTVHADDPISFMQLTAKNETSSKEDQFQLSLLAAMGNTQRKEASDPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPY
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEF
RQMWAEFEWENKVTVNTNITELNDYLQHILGSTNMKCLTPEKALSGVCGFMAANLYARSI
FGEDALANVSIEKPIHLGPDAPVNGHIRIRAKSQGMALSLGDKINLSQKKSAS
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagcagagaacgtgtgttataccctgattaatgtcacttctgacgctgaaccc
ccatcagaagtcagccttaagacagatttagaaaagggggagataaaagcaaagacagaa
gccttaaagaaggtgatcatcatgatcctgaatggtgagaaacttccaggccttttaatg
accattatccgcttcgtgctcccacttcaagaccacaccatcaaaaagctgctgctagtc
ttttgggagattgtgcccaaaacgacccctgatggcaaactccttcaggaaatgatcctg
gtctgcgatgcttaccgcaaggatcttcagcatcccaatgagttcatccggggctccaca
ctgcgcttcctgtgcaagctgaaggaggctgagctgctggagcctctgatgccagccatc
cgcgcctgcctggagcaccgccacagctatgtgcgtcgcaatgccgttctcgccatctat
actatctacaggaactttgaacatttgatcccagatgcaccagagctgatccatgatttc
cttgtcaatgaaaaagatgcaagctgcaaaagaaatgcgttcatgatgctgatccatgct
gaccaggatagagctcttgattacctgagcacctgcattgatcaggtacacacatttgga
gacattctgcagctggtcattgttgaactgatctataaggtatgccatgctaacccctcc
gagagagcccgcttcatccgttgcatttacaatctgctccagtcctccagccctgctgtg
aaatatgaagcagctggcaccctggtcactttgtcaagcgcacccactgccattaaggct
gctgctcaatgttacattgacttgatcattaaggaaagtgataataacgtcaagcttatc
gtgctggaccgactaattgagctgaaggaacaccccactcatgagcgtgttctccaggat
ctggttatggatatcctgagagtcctgaccacccctgaccttgaggtgcggaagaagacg
ctgcagctggctctggacctcgtgtcatctcgtaatgtggaggagttggttattgtgctg
aaaaaggaagtgatcaagaccaataatgtaaccgaacatgaagacacggacaaatacaga
cagctgttggtccgcactctccactcctgcagcgtgcgcttccctgacatggctgccaac
gtcattccagtgctgatggagtttctgagtgacacaaatgaagcagctgccgcagatgtg
ctggaatttgtgcgggaagccatccagaggtttgacaacctcagacctcttatcatagag
aaaatgctggaggtgttccactccatcaaagctgtcaaaatttttagaggagcgctgtgg
attctgggagaatactgcagcaccaaagatgacatccagagtgttatgactgaagtacga
aggtctcttggagagatcccaatagttgagaatgaaatcaaaaaggaggctggcgaactg
aagccggaagaggaggtgagtgcggcacctgctcagaaactcgttacagagatgggcacc
tatgccactcagagtgcccttagctcctccagaccctccaagaaagaggaggacagacct
ccactgagggggttcctcttagatggagatttctacgtcgctgcatctcttgccaccaca
ctcaccaaagtagccctgcgctacctagtcatcgttacagacaagaaaaagcaaaactcc
tttgtggctgaagccatgctgatcatggctacagtgctacacctgggcaagtcatcgctg
cccaaaaagcagatcacagacgacgacgtggagcgcatctctttgtgcctcaaggtgctg
gcagagtgcccgccactcatgaacgacatcttcaacaaggagtgccgcaagtctctgtcg
cacatgctcactgtgcgtctggaggaggagaagctctcccagaagaaagaatcagagaaa
cggaatgtgacagtacatgccgacgaccccatctccttcatgcagctaacagccaagaat
gagacgagctccaaggaggaccagttccagctcagtctgctggccgccatgggcaacacg
cagaggaaggaggcgtccgaccccctcgcatctaaactcaacaaggtcacacagctgacc
ggtttctctgatccagtctacgccgaggcatacgtccacgtcaaccagtacgacatagtg
ctggacgtgctggtggtcaaccaaaccagtgacaccctgcagaactgcacactggaactg
gccacattgggtgacctaaagctggtggagaagccatctcctctcacgctggctccatat
gactttgccaacatcaaggccaatgtcaaagtggcctccacggagaatggcatcatattt
ggaaatatcgtgtacgatgtgtccggagcagccagcgacaggaactgtgtggttctcagc
gatatccacattgacatcatggactacattcagccagcctcctgtactgatgctgagttc
agacagatgtgggcggaattcgagtgggaaaacaaggttacagtgaacaccaacatcaca
gagctgaacgattaccttcagcatattctgggctccaccaacatgaagtgcttgactcca
gagaaggctctttccggtgtctgcggcttcatggccgccaacctgtatgcccgctccatt
tttggcgaggacgcgctggcaaatgtgagcatcgagaaacctattcacctgggcccagac
gcaccagtcaatggtcacattcgcatccgggccaagagccagggtatggcattgagtctc
ggtgacaagataaatctctcccagaagaaatctgcctcataa
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