Trichomycterus rosablanca: 134331402
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Entry
134331402 CDS
T09921
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
trn
Trichomycterus rosablanca
Pathway
trn04510
Focal adhesion
trn04512
ECM-receptor interaction
trn04518
Integrin signaling
trn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134331402 (col6a2)
04518 Integrin signaling
134331402 (col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134331402 (col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134331402 (col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
trn04147
]
134331402 (col6a2)
00536 Glycosaminoglycan binding proteins [BR:
trn00536
]
134331402 (col6a2)
Exosome [BR:
trn04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
134331402 (col6a2)
Glycosaminoglycan binding proteins [BR:
trn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134331402 (col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
134331402 (col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
FAM180
Motif
Other DBs
NCBI-GeneID:
134331402
NCBI-ProteinID:
XP_062868868
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All DBs
Position
17:complement(25272946..25298515)
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AA seq
901 aa
AA seq
DB search
MMLSKVILLCFLYGAAVYGQKCNQKKDCPIDLYFLIDTSETIALQLDQEGRLVEHIKVFV
EDFVKRLENMVYKSVVHISWSVGGLHFSMRQERISQLTDKNDFISRLQQISYLGKGTFID
CAIKNMTKDMLNAPSKPNATRFAVVITDGYVTGTPCGGIKVAAEQARDESIKLFAVAATK
TVYETGLREIANSPAGLYRDNYLAVNLSSPSFSDQRTIDQIYNAMLHLAYQECYQVNCLE
TPGPPGVLGPRGQKGAKGDNGEPGLKGDGGPPGDPGIEGPIGYPGPKGHRGHKGEKGEYG
TQGRKGVGGVAGRNGTDGQKGKIGRIGVPGCKGDPGDKGPNGYPGDVGDSGPPGAAGEKG
DPGRPGRAGPAGPSGDPGPKGERGSPGTPGEPGQKSTAGTPGGPGPKGDPGRRGDAGPKG
SQGPNGPKGDKGEPGPEGQRGLSGEIGNKGTKGDPGLPGPRGPAGSPGEPGRNGTRGDPG
DAGPRGDPGPRGPNGDTGRPGFSYPGPRGPTGDKGEKGRHGARGGRGDCGQKGESGKKGT
PGEPGESGPPGEPGPRGTIGDQGRNGDPGPEGDPGLTECDVMNYIRETCGCCDCEKKCGA
VDIVFVIDSSESVGLTNFTLEKNFVINTVNRLGSIAKDPLSETGTRVGVVQYSHDGTFQA
IHLNDSKIDSLPAFKEAVKNLEWIAGGTWTPSALKFAYDNLIRESRRTKARVTVVVITDG
RFDPRDKDTGLTYLCSDDRVDVNAIGVGDMFEVKEQQENLVSIACNKPDKVTGMRRFADL
VAEEFIENFETVLCPNPEIVCPELPCKSDEVPQRNGYRIPCIAEERTDSQVPDNSDLINT
LQEAKHPDAYIRAVATMAYTAQRAKFASGSEKQQWTDMFIDSFKVVYADIMGDPNKVFQL
C
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtccaaagtcatactcctgtgcttcctgtatggagcagcagtgtatggccag
aagtgcaaccaaaaaaaggattgtcccatagacctgtacttccttattgatacatcagag
accatcgcgctgcagttagaccaagaaggtagactggtggagcacatcaaagttttcgtt
gaagactttgttaaaagactggagaatatggtctacaaatctgtggtgcatatcagttgg
tccgtaggcggactccacttttccatgaggcaggagagaattagccaactcactgacaaa
aacgacttcataagcagattgcaacagatcagctacctgggcaagggtaccttcatcgac
tgtgccatcaaaaacatgacgaaagatatgctcaacgcaccttctaaaccaaatgccacg
cgctttgctgtggtcatcacagacggttatgttactggaaccccatgtggaggcattaag
gtggcagccgagcaggctcgggatgagtccattaagctgtttgcggtggcagcaaccaag
actgtgtatgaaacagggctcagagagattgccaattcacccgctgggctttaccgtgac
aactacctggctgtgaatttatctagtccatcattttctgatcaaagaactattgatcag
atttacaatgccatgctacatttggcgtatcaagagtgctaccaagtgaattgcttggaa
acacctggaccaccaggtgtactgggacccaggggacagaaaggcgccaaaggggacaat
ggtgaacctggtcttaaaggtgatgggggtcctcctggtgatcctggtattgagggtcct
attggttatccggggccgaagggacaccgtggtcataaaggtgaaaagggagaatatggc
acacaaggaagaaagggagttgggggggtagctgggcgaaacggcacagatggtcaaaag
ggcaaaattggccgcatcggggttcctggctgcaaaggtgacccaggtgacaagggtcct
aacggttatccaggagatgtaggagacagtggccctccaggagctgctggagagaaggga
gatccaggtcgacccggaagagcaggaccagctgggccatcaggagatcctggtcccaag
ggtgaaagaggaagtccaggaacacctggtgaaccagggcaaaaaagcacagcagggaca
cccgggggtcctggtcctaaaggcgaccctggaagaagaggagacgctggaccaaaggga
agtcagggaccaaacggaccaaaaggagataagggtgagccaggaccagaaggtcagagg
gggctttcaggtgaaattggtaataaaggaacaaagggagacccaggacttcctggacca
agaggaccagcagggtctccaggagaacctggaagaaatggaacacgtggtgaccctggt
gatgctggacccagaggagatccaggacccagaggaccaaatggcgacactggcagacca
ggattcagctaccctggaccaagaggacctacgggtgacaagggagaaaaaggcagacat
ggagccaggggaggcagaggagactgcggacagaagggagaatcaggcaaaaaaggaact
ccaggagagcctggagagtccggaccccccggtgagcctggaccaagagggacaataggt
gaccaaggaagaaatggtgatcctggtccagaaggagatccaggccttacagaatgtgat
gtcatgaactacatccgggagacctgtgggtgttgtgattgtgaaaagaagtgtggagct
gtggacattgtatttgtgattgacagctcagaaagtgtggggctgaccaacttcaccctg
gagaaaaactttgttatcaacacagtcaacagattgggctcaatagctaaagatccactt
tcagagacagggacacgtgtcggggtggtccagtacagccacgacggaacctttcaggcc
atccatctcaatgactccaagattgactcgctgccagcctttaaagaggcagtaaagaac
ctggagtggattgcaggtggcacatggactccgtccgccctgaaatttgcctatgacaac
ctaatccgtgaaagtcgccgtaccaaggctagagtaactgtggtggtgatcacagatggt
cgctttgatccccgggataaagacactgggcttacctacctctgcagcgatgacagggtt
gatgtgaatgccattggtgttggagacatgtttgaagtaaaagagcaacaagagaatttg
gtgtccattgcatgtaacaaacccgataaggtgactggcatgagacgctttgctgacctg
gtggcagaagaattcatcgaaaactttgaaacagttctctgcccaaacccggagattgtc
tgtcctgagcttccgtgcaaatcagatgaggtgcctcagaggaatgggtaccgaatacct
tgcattgctgaggaaaggacagacagccaggtcccagacaactcagacttaatcaacact
ctgcaggaggccaagcatcctgatgcctacattagagctgtagccacaatggcctacaca
gcccaaagagccaagtttgccagcggttctgagaaacaacagtggactgatatgttcatt
gacagtttcaaagttgtctatgccgatataatgggtgaccctaacaaagtcttccagctg
tgttag
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