Trichomycterus rosablanca: 134331446
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Entry
134331446 CDS
T09921
Symbol
pkd1l2a
Name
(RefSeq) polycystin-1-like protein 2
KO
K04988
polycystin 1L2
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
trn04040
]
134331446 (pkd1l2a)
04091 Lectins [BR:
trn04091
]
134331446 (pkd1l2a)
Ion channels [BR:
trn04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
134331446 (pkd1l2a)
Lectins [BR:
trn04091
]
C-Type lectins
Others
134331446 (pkd1l2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Lectin_C
SUEL_Lectin
Ion_trans
GPS
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
134331446
NCBI-ProteinID:
XP_062868942
LinkDB
All DBs
Position
17:complement(9483227..9513834)
Genome browser
AA seq
2469 aa
AA seq
DB search
MDRHPLSHLLLVVILSSAAVLGEDETETLSCPHHQKAFDGSCYEFVSLQRTVVDAQSWCE
RSGGHLAFIQNDETQQFLQEHLQSGKHWWLGLAPASFNLSLDLDDAANGLLSWLDGSDVS
YSNWFSEPVLGAACGYISNNSKFQWETSKNCSQEFNFICEFESGRSLTCGDQNATLQCGS
GQVIVIDDSFYGRKTLHYCTADRSVTQTSSQEECRWVDAMELISAQCHGLQVCQAVIDVA
SFGEPCAGLGSYLSVEYHCKDGLHLLMNKVAAVSSNVTLTVKWLLHPFQGNLTCLLTTGD
GHIIDPYSPKELQSKVVHTYQHTGDYTITVECSTSEWHVTAQKTIAIQEPLVQFGIIICH
SSNHSTDSRNCKGLYHHAMKIQVQLNAGTNVTYRIQHGDTELARSSSLEGKIPHNITLSL
EVLNILGSGCHQLILKASNLVTDPDVSAPLELCLVEPVQGLQVFVAPEQDSCSGSDLNVN
VSLGQGAPVELLFLISGTNTNFSETHQMLNGSLQVFKISNNIEGTLRVKVRATNLFSSME
VDAGTTTVDCQVDTENSTEKNLTVPNSLVITSNPENPVIGTSNIMLGINGLDGNTTLYTF
AWNCSGSCSCNVSTQTETHQISADCLPPPYSFSVFSVTATNTMGQSQSAVRCVSVTPGRD
FNPVITCSNCNPVNVSVDVKLTLQCEGCQQMVWYLEDMTPVSSVLSSCYSNSGQKPLIKQ
KEGVDTLTIESTTLVNAQKNIHVVAYGVKDGLSGSTEFSVPIFSTSIDSQSSATSVTLTT
QNQTEASLTTINPPSCDIIPRVGDILTPFNITCTITSLFCKARICTYCFRTSTGDYLNCG
HKPSVESLFLPLGVGSNYNLVIVVTVENEEGLKINTTISVQVNDVKVGSTVQDLETLMSK
QVDQLQQHGKLTRTALAQMYHSVSNKLNGDSAGSQEQTAKKKLRERMLSDLGTAVNAAPL
RNPTEVQMTADAVVGITTQSEELTSTAQWEASSLLSNLSRSLVFLNFSGGDDKTSTRQVV
TPIVQAASNILKVSASSDMQETISENLLNAAENIQSALLAGTSADQEPIIVSTEEISVYV
NRMSAEKLQEQSFSVNYSSSASFVLPSLGPDVLPFEEAVDVRMLSFAINPFSWREGESIS
GAVGSLSITRENGSVIPVSNLTKEIEILLPRPETEVNSTFLDLGNYSTLVINVTTPNISL
VLKLDPSEEIPLHLLLGFEHFPNNTNYKAAIQLPQPGNSAEERYTWVLDPRDMAIDTGVY
YLLVRPIVEVGVNSTNASVFITSIAAQCKYWDEAGNNWSDYGCRVGPRTTALLTQCLCTH
LTFFGSSFFVMPNLVDVSRTAELFATFVNNPVVVCFVGAIFLVYLMVVVWARKKDIQDTA
KVKVTMLEDNDPLAEYRYLLTITTGHRRGASTSSQVTVTLLGTEGESEPHHLTDPEKPVF
ERGGVDMFLLTTPFCLGELQSIRLWHDNSGKHPAWYVNKVMVQDLETGQKWHFLCSSWLA
IDMGECTLDKVFHAATEMDLKRFSNLFFTKTTKDFQDGHIWFSVINRPPNSNFTRVQRVS
CCFSLFLCTMLTSIMFWGIPTDPSEQTMDLGKIEFTWQQVIIGIQSSIIMFPINLLIVSI
FRNARPRERKSDKQQKIDSTLHEKTECTATSQPPSPQSNHREITPDSVIKDIKRIAQSLS
KALRNPMPVIDPGKMDINALLSIVEDIIRQQNCVDREFYSDNSKNNLAISLVSVNLQDRS
PEQILTEKQTIYKQYLYKQLENVEKELKLLGPLRFPKPEGYVQAVLQVQGMKQMLEPYVS
SSSIRDQVSCSSSIAEEQGSNKKGLPWWFVYLGWILVAATSGVSAYFTMMYGLTYGAERS
ISWLISMVVSFFESLFITQPIKVLGFAVFFALVLKKVDQEEYGDVPIDGTSKTDDPNDIC
IARRDSTCSFYQPPPPTDIEKMRKNMIKEQKVFALIREILIYVGFLWMLLLVAYGQRDPN
AYFLSKHIEKSFKNGISDSMNHKDVFTWANTTLLNNIFGKQPGFITDGNSKLVGNAHLRQ
VRVHKNSCRTAKSMQHPLPDCHAPYSWEVEDMGSYGPGWNRSKDVHVLETLNMPWEYKSQ
SRLRAHPIWGRVAFYRGGGFVVDLGTTKENASSLLQYLFDNIWLDVYTRAIFVEFTVYNA
NVNLFCIVTLMFETTAVGAFQYRSDLQSVHLYQSTGGFHIFVMASEALYFLFILYYMFEQ
GTLMRQQKINYFRSKWNLLELAIIILSWSALCVFIKRTILGNRDIEYYHNHKDQHASFHE
TAAADGVLGYLIAFLVLLATVKLWHLLRLNPKLHMITATLQRAWNDISGFIVVMTVMLLA
YSIACNLMYGWKLYSYHTLLHAAQTIVSLQLGIFNYEEVLNYNPVLGAFVVGSCIIFMTF
VVLNLFISVILVAFSEEQIHHQPSEEEEIVDLMLTKICSLFGVKVKKNQSSDNNKLNHSA
GASTLSVIS
NT seq
7410 nt
NT seq
+upstream
nt +downstream
nt
atggacagacatcccctctcccatctcttgcttgtagtcattctcagttctgctgctgtt
cttggggaagatgaaactgagaccctgtcctgcccacaccaccaaaaagcttttgacggt
tcctgttatgagtttgtttccctgcagcgcaccgttgttgatgctcagagttggtgtgag
cgcagcggtggacacctagcgttcatccagaacgatgagacacagcagtttcttcaggaa
catttgcagtctggaaaacactggtggctgggattggcgcctgcctcgttcaacctcagc
ctggatctggatgatgctgccaacggtcttttgtcatggctggatggatctgatgtaagt
tactccaactggttcagtgagccagtgctcggtgcagcctgtggttacatctcaaataac
tccaaatttcaatgggaaacaagcaaaaactgtagtcaggagttcaactttatctgcgag
tttgagtcaggacgctctctaacctgtggggaccaaaatgctacgctgcagtgtggctct
gggcaagtgatagtaattgatgacagtttttatggcagaaagacgctacattactgcact
gctgaccgctctgtaacgcaaacgtcttcacaggaggagtgcagatgggtggatgcaatg
gagttgatttcagcgcaatgccacgggctgcaggtatgccaggctgtcattgatgttgca
tccttcggcgagccttgcgcaggactgggaagctacttatcagtggagtatcactgcaaa
gatggtcttcacctactgatgaacaaggtggccgctgtctccagtaacgtcactttaact
gtaaagtggctgcttcaccctttccaaggcaacctcacatgtctgttgaccactggtgat
gggcacattattgacccctacagtcctaaagagttacagagcaaagtagtgcacacctac
caacatactggagactacactattacagtggagtgcagcaccagtgaatggcatgtaaca
gctcagaaaaccatcgccatccaagaaccccttgtacaatttggcataataatatgccac
agctcaaaccactcaacggacagtagaaactgcaaaggcctgtaccaccatgccatgaaa
atccaagtgcagctaaatgctggtactaacgtcacctacagaatccagcatggtgacaca
gaactcgcccgctcatcttcactcgaaggaaaaattccacacaacatcaccttgtcttta
gaagttctaaatatcctgggctcaggatgccatcaactcatcctcaaggcttccaattta
gtgacagatccagatgtgtctgctcctttagaactttgcttggtagagccagtgcagggt
ctgcaggtctttgtggcaccagaacaggactcttgctccggttcagatctaaatgttaat
gtttctctggggcaaggtgctccagtggagctgctctttctgatatctgggacaaacaca
aacttctctgagacccaccagatgctaaatggcagtttacaggtcttcaaaatttccaac
aatatagaaggtacattgagggtaaaagtcagggcaacaaacttgttttcatcaatggaa
gtggatgctggaaccacaacggtagattgccaggttgacacagaaaattcaacagaaaaa
aatttgacagtaccaaacagcctggtgattacctcaaacccagagaacccagtcattggt
acaagtaatataatgctgggcattaatggccttgatggaaatacgactctttatacattt
gcatggaactgcagtggatcatgttcctgtaatgtcagtactcagactgaaacccatcaa
ataagtgccgattgtctcccaccaccctatagtttttcagttttctctgtgactgcgact
aacacaatggggcagtcacagtcagcggtcagatgcgtctctgtcactccagggagggat
ttcaatcctgtcattacttgttccaactgcaacccagtgaatgttagtgttgatgttaag
ttgacattacagtgtgaaggctgtcagcaaatggtttggtatcttgaagacatgacacct
gtttctagtgttttaagttcctgctattctaatagtggacagaagcctttaataaagcag
aaggaaggagttgacactcttacaattgaaagtacaactctggtcaatgcacaaaaaaac
atacatgttgtggcttatggtgtgaaagatggcttatctggatctactgaatttagtgtt
ccaatcttcagtacctcaattgactctcaatcttcagcgaccagcgtgactcttacaacc
cagaaccagactgaagcctcattaacaacaatcaatccaccatcctgtgacattattccc
agggtgggagatattctcacacctttcaacatcacatgcactataacttcattgttttgc
aaagctagaatttgcacatactgcttcagaacatccaccggtgattacttgaactgcggc
cacaagccgtctgtggagtcattattcctccctctcggagttggcagtaactacaacctg
gttatagtagtcacagttgagaatgaagaaggactgaaaataaacactacaatatctgtc
caggtaaatgatgttaaagttggaagcacagtgcaggacctggaaaccctcatgtctaaa
caggttgaccagctgcagcagcatgggaaactgaccagaacagctttggcacagatgtac
cactctgtttctaacaaactaaatggggactcagccggtagccaagagcaaactgccaaa
aagaagctacgagagcgcatgctgtcagaccttggaacagctgtgaatgctgcccccctc
aggaaccccacagaggtacaaatgacagctgacgctgtagtgggcatcactacacagagt
gaggaactcacctctacagcccagtgggaggccagttctcttttgtcaaacctgagtaga
tccctggtctttctcaatttctctgggggcgatgataaaacatcgactaggcaggtggtt
acacccatcgttcaagctgccagtaacatcctcaaagtttctgccagctctgacatgcag
gaaacgatctcggaaaacctgctaaatgcagcagaaaacatacagagtgctctgctggct
ggaacaagtgcagatcaagagcctatcattgttagtactgaggagatcagtgtgtatgta
aacagaatgtcagcagagaaacttcaggaacaatcattcagtgttaattacagcagctca
gcgagctttgtgctcccctctttgggtcctgatgtgcttccttttgaagaggcagtggat
gtgcggatgctaagttttgccatcaatccgttctcttggcgggaaggcgagtctataagt
ggagcagtggggtctctctcgatcactagagaaaatggatctgttattccagtatcaaac
ctcacaaaggagattgagattcttctaccaagaccagaaacagaagtaaacagcacattt
ttagacctaggaaactacagtaccttagtcatcaatgtaaccacacctaacatttctctt
gtcttgaaactggatccctccgaagagatacctttacatttgctactgggttttgaacac
ttcccaaacaataccaactacaaggctgcaattcagctccctcaaccaggaaactcagca
gaagagagatacacatgggttctggaccccagagatatggccatagatacaggagtttac
taccttttggtgaggcctattgtagaggtaggagtgaactctacaaatgcctctgtgttc
atcacttcgattgctgctcagtgcaagtactgggatgaggctggaaacaactggagtgac
tatggctgcagagttgggcctcgcaccacagcactgttaactcagtgcctctgcacccac
ttgacgtttttcgggagctcttttttcgtcatgcccaacctagtggatgtgtcccgcact
gctgaactttttgccacgtttgtcaataatcccgtggtggtgtgttttgttggtgcaatc
ttcctggtttatcttatggtagtggtgtgggcacggaaaaaggacatccaggacaccgcc
aaggtaaaagtcacaatgctagaggacaacgacccattggccgaataccgatacttactg
actattaccactgggcatcgccgtggggcttccacatcctctcaggttacagttactcta
cttggtacggagggggagagtgagccccatcatctgactgacccagaaaagccagtattt
gaaaggggaggggtggacatgttcctccttaccactcctttctgtctcggagagctgcag
agcatcagattatggcatgataattctggaaaacatccagcttggtatgttaacaaagtg
atggtgcaggacctggagactggacagaagtggcacttcttgtgtagttcatggttggcc
atcgatatgggcgagtgcaccctggacaaagtgttccatgcagcaacagaaatggacttg
aaacggtttagcaatctgttcttcacgaagaccaccaaagatttccaagatggtcacatt
tggttctctgtaatcaaccgtccaccaaatagtaacttcactcgagtgcagcgtgtttcc
tgctgtttctccctgtttctctgtaccatgctgaccagcatcatgttttgggggattcca
accgatccttcagagcagaccatggacctgggtaaaattgagtttacctggcagcaagtg
attattgggatccagagttccatcattatgtttcccatcaatcttttaatcgtgagcatc
ttcagaaatgctcgaccaagggagagaaaatctgacaaacagcaaaagattgattctact
ctgcatgaaaaaacagaatgtacagcaacatcccaacctccttctccacaaagtaatcat
agagaaatcacaccagattctgtgatcaaggacatcaaacgaatagctcagtccctctcc
aaggctttgagaaaccccatgccagtgatagaccctgggaaaatggatatcaatgcactc
ttatcaatagttgaagatattattagacagcagaattgtgtagatcgtgaattttactca
gacaactctaaaaataacctggctatatctctggtgtcggttaatctgcaagacaggagt
cctgagcagatactgacagagaaacaaactatctacaagcagtatctctacaagcagctg
gaaaatgtggagaaagagctaaaactgcttggtcctttacgatttcccaagccagagggc
tacgtccaagctgtgctccaggttcagggtatgaaacaaatgttagaaccgtacgtctcc
tccagctccatcagggaccaggtcagctgcagctccagcatagcagaagagcaaggaagc
aataagaaaggcctaccatggtggtttgtgtatttgggatggattctcgttgcagccact
agtggagtgtcagcgtacttcaccatgatgtacgggctgacctatggagcagagcgttcc
atcagctggcttatttccatggtcgtgtcattttttgagagtctcttcattacccagcct
ataaaggtacttggatttgctgtcttctttgcactagtcctaaagaaagttgaccaggaa
gaatatggggatgttccaattgatggaacttcaaagacagatgaccctaatgacatatgc
attgccaggagagacagcacatgcagcttctaccagcctccacctcctactgatattgag
aaaatgagaaaaaacatgatcaaagaacagaaagtctttgcacttatccgggagattctc
atttatgtaggattcctctggatgctgctcctggtagcttacggtcagcgtgatccgaat
gcctacttccttagtaaacacattgaaaagagcttcaagaatggtatttctgacagtatg
aaccacaaagatgtgtttacctgggcaaacaccaccctcctaaataacatttttggaaag
caaccaggcttcatcacagatggaaactcaaagctggttggcaatgctcatctccggcag
gttagagtacacaagaactcttgcaggactgcaaaatctatgcaacaccctcttcctgat
tgccatgctccatactcttgggaagtagaggacatgggctcatatggtcctggctggaat
aggtcaaaggatgtacatgtgcttgagaccctaaacatgccctgggagtacaaaagccaa
tctagactacgggcgcaccctatctggggtagggtggctttttacagaggaggaggcttt
gtagtagatcttggtacgaccaaggaaaatgcaagcagtttgcttcagtacctctttgac
aacatctggttggacgtatacactcgggctatctttgtggagttcacagtatacaatgcc
aacgtcaacctcttctgtattgtcaccctgatgtttgagacaacagcagtaggagcattt
cagtatcgcagtgatctacaaagtgtccatctctatcagtccactggaggtttccatatc
tttgtcatggcctctgaggcactctattttctcttcattctctattacatgtttgagcag
ggcacgctcatgagacagcagaaaataaactacttcaggagcaaatggaatctgctagag
ctagccataattattttaagctggagtgcactgtgtgtctttatcaaaaggactattttg
ggtaaccgtgacattgagtattaccataatcataaggaccaacatgctagttttcacgag
actgcagcagcagatggagttcttggatacctcatagctttcttggtcctgctggcgaca
gtcaaactctggcatctgctgcgtctaaaccccaaactgcacatgatcactgcaacgttg
cagcgggcgtggaatgacatctctggctttattgtggtcatgacggtcatgttgttggcc
tactcgattgcgtgcaatttgatgtatggatggaagctttactcctaccacactcttcta
catgcagctcagaccatagtcagcttgcaactgggcatcttcaactatgaagaggttttg
aattataatcctgtccttggggcgtttgtggttggttcctgcatcatcttcatgacattt
gtggtgctcaacttatttatatcggtcatcctggtggcattctctgaggaacaaatacat
catcagccgtctgaagaggaagaaatcgtggacctgatgctcacaaagatatgtagcctt
tttggagtcaaggttaagaagaaccaatcgtctgacaataataaactaaaccattctgca
ggtgccagcacactttctgtcatttcataa
DBGET
integrated database retrieval system
