Trichomycterus rosablanca: 134331458
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Entry
134331458 CDS
T09921
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
trn
Trichomycterus rosablanca
Pathway
trn03018
RNA degradation
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134331458 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
134331458 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134331458 (lsm7)
03041 Spliceosome [BR:
trn03041
]
134331458 (lsm7)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134331458 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
134331458 (lsm7)
Spliceosome [BR:
trn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
134331458 (lsm7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
InhA-like_MAM
Motif
Other DBs
NCBI-GeneID:
134331458
NCBI-ProteinID:
XP_062868958
LinkDB
All DBs
Position
17:complement(1370955..1373825)
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AA seq
103 aa
AA seq
DB search
MADKEKKKKESIFDLSKYIDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD
QYKLTEDTRQLGLVVCRGTAVVLICPQDGMEAIPNPFIQQQDG
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaagagaagaagaagaaggagagtatatttgacctgtcgaagtacatcgac
aagaccatcagagtcaaattccaaggtggacgagaagcaagtggcgtcctgaaagggttc
gaccctctgctgaacctggtgttggacggtacgatcgagtacatgcgtgatcccgacgat
cagtacaagctgaccgaggacacccggcagctcggcctggtggtgtgccgcggcacggcg
gtggtcctgatctgtccgcaggacggcatggaggccattcccaaccccttcatacagcag
caggacggctaa
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