Trichomycterus rosablanca: 134331550
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Entry
134331550 CDS
T09921
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
trn
Trichomycterus rosablanca
Pathway
trn03030
DNA replication
trn03410
Base excision repair
trn03420
Nucleotide excision repair
trn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134331550 (rfc4)
03410 Base excision repair
134331550 (rfc4)
03420 Nucleotide excision repair
134331550 (rfc4)
03430 Mismatch repair
134331550 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trn03032
]
134331550 (rfc4)
03036 Chromosome and associated proteins [BR:
trn03036
]
134331550 (rfc4)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134331550 (rfc4)
DNA replication proteins [BR:
trn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
134331550 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
134331550 (rfc4)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
134331550 (rfc4)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
134331550 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
134331550 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_assoc_2
AAA_30
AAA_16
AAA_11
AAA_22
AAA_24
SLFN-g3_helicase
Mg_chelatase
AAA_19
AAA_14
DUF815
Cdc6_lid
DNAX_ATPase_lid
Gp44_lid
AAA_5
RuvB_N
ResIII
AAA_28
AAA_7
Motif
Other DBs
NCBI-GeneID:
134331550
NCBI-ProteinID:
XP_062869082
LinkDB
All DBs
Position
17:complement(7532949..7541196)
Genome browser
AA seq
357 aa
AA seq
DB search
MQAFLKGSTQSVKPQKDKAGASGSGEKRQKLVPWVEKYRPRCVDEVAFQEEVVAVLKKSL
EGSDLPNLLFYGPPGTGKTSTILAAARELYGPELYKHRVLELNASDERGIQVIREKVKTF
AQLTVAGTRTDGKSCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVSRI
INPLTSRCSKFRFKPLGDEIQHERLVNICTKENLKYTKEGIEALVKVSEGDLRKAITLLQ
SAARLTSEKEVTESIIIEISGVVPPKVIENLLKTCYKGTFEKVEIAVKDMIDEGYAATLI
LNQLHDIIIEEKLNDKQKSVITEKMAVVDKCLVDGADEYLQLLNLCSVIMQQAAQSS
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcttttctaaaaggatccacacaaagtgttaaaccacaaaaggacaaagcagga
gcatcgggcagtggagagaagcgtcagaagctggtcccatgggtggaaaaatacaggccg
aggtgtgtggatgaagttgcctttcaagaggaggttgttgcagtattgaagaaatcacta
gagggctctgatttgcctaatttgctgttttacgggcctccaggaacaggaaaaacatcc
acaatcctggctgcagcaagagagctttatggtccagagctatacaaacacagggtgctg
gagctaaacgcctcagatgaaagagggattcaggtgattcgagaaaaagtaaaaaccttt
gctcagctcacagtggctgggacacgaacagatggaaaatcttgtcctccgtttaaaatc
atcattcttgatgaggcagactccatgaccaacgctgcccaggctgctctcagacgcacc
atggagaaagagtctcgtaccactcgcttctgtctcatctgcaactatgtcagcagaatc
attaatcctttgacgtcccgctgctccaagttccgctttaaacccctcggagacgagatt
cagcacgagcggctagtaaacatctgcacgaaggagaaccttaagtacaccaaagagggt
attgaggcgctggtcaaagtatcagagggagatcttcgaaaagctataacactcttgcag
agtgcagcacgactcacttcagagaaggaagtcacagagagcatcattatagagatctca
ggggtggttccaccaaaagtgattgaaaacctgctgaagacctgttacaaaggcactttt
gagaaagtggagattgcagtaaaggatatgattgatgaaggctacgctgccacactgata
ctaaaccagctccatgacattattatagaggagaaactgaatgataaacagaagtctgta
atcacagagaagatggcagtggtggataagtgcttggtggatggcgctgatgagtacttg
cagttgttgaatctttgctcggtcatcatgcagcaggctgcacagagcagctga
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