Trichomycterus rosablanca: 134331927
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Entry
134331927 CDS
T09921
Symbol
fxr1
Name
(RefSeq) RNA-binding protein FXR1 isoform X1
KO
K15516
fragile X mental retardation protein
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134331927 (fxr1)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134331927 (fxr1)
Factors involved in mRNA localization
Other mRNA localization factors
134331927 (fxr1)
mRNA cycle factors
Stress granule specific factors
134331927 (fxr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
Tudor_FRX1
KH_9
KH_1
Agenet
FXR_C1
FXR_C3
KH-I_KHDC4-BBP
Tudor_2
Motif
Other DBs
NCBI-GeneID:
134331927
NCBI-ProteinID:
XP_062869548
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All DBs
Position
17:932074..947987
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AA seq
671 aa
AA seq
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MDELTVEVRGSNGAYYKGFVKDVHEDSLTISFENNWQPERQVPFSDVRLPPPSDAKKEIG
EADEVEILSKANEQEPCGWWLAKVRMLKGDFFVIEYAACDATYNEIVTFERLRPVNVNKP
VMKDTFHQCTVPVPEDLKSACLSEEAHKDFRKAVGASRIVFNPETCELVVLSVSEVTVKR
VTLLSDMHLRSLRTKLMLVYRNEEATKHLENTKQLASAFQDEFTVRADLMGLAIGTHGTN
IQQARKVPGVTAIELDEGSGTFRIYGETEEAVQKARSFLEFLEESVQIPRNLVGKVIGKN
GKVIQEIVDKSGVVRVRIEGDNDNNLPRQEGMVPFTFVGTKENIGNVQVLLEYHIAYLNE
VEQLRLERLHIEDQLRQIGMGFRPVSSRPAEKDKEKTHGTDKTAPAGPPHSGRSYLGRGR
ARRGHGHNYAYGTNSEHSNTSETDSERRDELSDFSLGGDEDGRGASQHRDNRRRAAGVRG
RGASGTRGRGAARGPSSTMSSVLKDPDRNPYSILENSESDLNADLELSESEPSLRSRRAR
RRRPDADDTTSHSENGMDEPEMKPQRRNRSTRRRFRPPEDRQPVTVADYISRAESHSRQK
SPRDARRNKKELGQPDAIAEHDGPKALSNGPDAKPLEQKTTAAQASGESSPRAPPGGKPD
TDAPTAVNGLS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggacgaactgacggtggaggttcgcggctccaatggagcttattataagggcttcgtc
aaagacgtccatgaggactcgctcaccatctccttcgagaacaactggcagcctgagaga
caagtgccgttcagcgacgtgcgtctgcccccgccctccgacgccaagaaggagatcggc
gaagcagacgaggtggagatcctctcgaaagcgaacgaacaggagccgtgtgggtggtgg
ctcgctaaagtacgaatgctaaagggagacttcttcgtgatcgagtacgccgcctgcgac
gctacgtacaacgagatcgtcaccttcgagcgcctccgcccggtaaacgtcaacaagccc
gtgatgaaagacaccttccaccagtgcaccgtgcccgtccccgaggacctgaagtctgca
tgtttaagcgaagaggcacacaaggacttccggaaggctgttggggccagcaggatcgtc
ttcaacccagaaacctgtgagctggtcgtactgtcagtgagtgaggtgacggtgaagaga
gtgacgctgctgagcgacatgcacttacggagcctccgcaccaaactcatgctcgtgtac
aggaacgaggaggccaccaagcacctggagaacacgaagcagctggcgtccgccttccag
gacgagttcacagtgagagccgacctgatgggtctcgctatcggcacccacggtacgaac
atccagcaggccaggaaggtgccgggagtcacggccatcgagctggatgaggggagtggt
actttcaggatttacggagagactgaagaggccgtccagaaagccaggagtttcttagag
tttctggaagagtctgtacagattcccagaaatctagtcggtaaagttatcggcaagaac
gggaaggtcatccaggagatcgtggataaatcgggagtggtccgggtgcgcatcgaaggg
gacaacgataacaacctgcccaggcaagagggaatggtgccgtttacgtttgttggcacg
aaggagaacatcggaaacgtgcaagtcctgctggagtaccacatcgcgtacctcaacgag
gtggagcagttgaggctggagcgtctgcacatcgaggatcagctccgtcagatcggtatg
gggttccgccccgtctcctcgcgccctgcggagaaggacaaggagaagacccacgggacg
gacaagaccgcgcccgccggccctcctcactcgggccgctcttatctgggccggggccga
gcacgcaggggccacggccacaactacgcctacggaacgaactctgagcactcgaacacg
tcggagacggactccgagcggcgggacgagctgagcgacttctctctagggggggacgag
gacgggcgtggcgcctcgcagcacagggacaacaggaggagagcagcaggggtcaggggc
cgaggagcatcggggacgagaggccgcggggccgctagggggccgagcagcaccatgagc
tcagttctgaaggacccggatcggaacccgtacagcattttggaaaactccgagtcggac
ctgaacgccgatctggagctgagcgagagcgagccgagcttgaggagccgccgcgcacgc
cgtcgacgcccagacgccgacgataccacatcacacagcgagaacggcatggacgagccc
gaaatgaaaccgcagcggaggaaccgcagcacccgacgccgcttccggcccccggaggac
aggcagccagtgactgtggctgattacatatcacgggctgaatctcacagccggcagaaa
tcaccacgagacgccaggaggaataaaaaagagctgggtcagccggacgccatagccgag
cacgacggccccaaagcgctcagcaacggccccgacgccaaaccgctcgagcagaagacg
acggcggcgcaggcgtccggggaatcctccccgagggcgccccccggcggtaaacccgac
acggacgcgcccacggccgtcaacggcctctcctaa
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integrated database retrieval system
