Trichomycterus rosablanca: 134331949
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Entry
134331949 CDS
T09921
Symbol
sox6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134331949 (sox6)
Transcription factors [BR:
trn03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
134331949 (sox6)
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
134331949
NCBI-ProteinID:
XP_062869597
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Position
17:18989945..19204256
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AA seq
758 aa
AA seq
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MSSKQATSPFAGTDGGEDGAGQERLVWEKEEGMETPLAAPQLPIHNLMLGKSHGEELPLV
SSGVPSESDWESLVSTNQCMESDSNKVCSLYSFRNNSTSPHKPEEGARERGDLLGASAFG
TPERRKGSLADVVDTLKQKKLEEMTKTEQDESSCMEKLLSKDWKEKMERLNTSELLGEIK
GTPESLAEKERQLSTMITQLISLREQLLSAHDEQKKLAASQMEKQRQQMELARQQQEQIA
RQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGMSY
KPGDNYPVQFIPSTMAAAAASGLNPLQLQQLYAAQLANMQLSPGAKMVPLQQPPILTGHL
SPGPKSEKRSSSPLGQIKEEGTQPLNLSSRPKTAEPVKSPMSPTHSLFPGSKSSPASLTK
SRGIPSPLQSLGRGSSLDILSNLNSTALFGDQDAVMKAIQEARKMREQIQREQLQHHHQG
MEAKLSALSGLGLNNCRTDKERSHFESLGHHLGKLGEDGKRVIDLTRPEDLDGGASSTEA
RVFREARGRNPNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQ
EKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFF
TVGQQPQTPLPISSSAGVVYPGAISMTSDCSSNSASPEPAVPVIQSTFSMKMEPNVPTVV
PSEAVNGEDEMDIYEDFEDDPKSDYSSENETQQSVTAN
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcaagccacctctccgtttgcgggtacggacggtggcgaggacggggcg
ggtcaggagcgcctggtatgggaaaaggaagaaggcatggagacaccactggcagcaccc
cagctgccaattcacaacctgatgctcggcaagtcacacggtgaagagttaccgctggtg
agcagcggcgtgccatctgaatctgactgggaaagtctggtgtcgaccaatcagtgcatg
gagtcagacagcaataaagtatgttccctttactccttccggaataactctacctctccg
cacaagccggaggagggggcacgggagcggggtgacctgctgggcgcctcggccttcgga
acgcctgaacgtcgcaaagggagcctggctgacgtggtggacacgctgaagcagaagaaa
ctggaggagatgacaaagacagaacaagatgaatcgtcctgcatggaaaaactgctttca
aaagactggaaagagaagatggagagactgaacacaagtgaacttctgggagaaataaaa
ggtacaccagaaagtctggctgaaaaggaaaggcagctctcaacaatgatcacgcagctg
atcagcctaagagagcagctcctctccgcccacgacgagcagaagaaactggccgcctcg
cagatggagaagcagaggcagcaaatggagctggctcgacagcagcaagaacaaatcgcc
agacagcagcagcaactgcttcagcagcagcacaaaatcaatctccttcagcagcagatt
cagcaggtccagggtcacatgcctccactcatgatccccatttttccacacgaccagcgc
actctggctgctgccgccgctgcccagcagggtttcctcttccccccaggcatgtcctac
aaaccaggtgataactaccctgtgcagttcattccttctacaatggcagctgctgcagcg
tcaggactcaatcctcttcaactccagcaactgtatgctgcccagctggccaacatgcag
ctctcgccgggagccaagatggtgcctctgcagcagccgcccatcttaactgggcatctt
tcacctggccctaagagcgagaagagatcctctagcccccttggtcaaattaaggaggaa
ggaacgcagcctctgaatctctcttccaggcccaagacagctgagccagtgaaatccccc
atgtcccccacacatagtctattccctggaagcaagagcagtcctgccagcctgaccaag
agcagaggcatccccagcccccttcaaagtctgggccgagggtcatccctagacatcttg
tccaacctgaactccacggcgctgttcggagaccaggacgcggtaatgaaggccatccag
gaggcgaggaagatgagagagcagatccagcgtgagcagctacagcaccatcatcagggc
atggaggccaaactctcggctctgtccggcctgggtctaaacaactgcaggaccgacaag
gagagaagccatttcgaaagtctggggcatcatctgggcaagttgggtgaagatggcaaa
agagtgattgacctgaccaggccagaggatctcgacggaggcgccagcagcaccgaagcc
cgggtgttcagagaagcgcgaggacggaaccccaacgagccacacatcaagagacccatg
aatgccttcatggtgtgggccaaagacgagcggcgcaaaattctgcaggccttcccggac
atgcacaactccaacatcagcaaaatcctgggctctcgctggaagtcaatgtctaaccag
gagaaacagccgtactatgaggagcaggctcgtctgagcaagatccacctggagaaatac
cccaactacaagtataagcctcggcccaagcgcacgtgcatcatcgatggcaagaagctg
cgcatcggcgagtacaagcagatgatgcgctcacggaggcaggagatgcgccagttcttc
actgtggggcaacagccccagactccgctccccatcagcagcagcgccggcgtggtctac
cctggcgccatcagcatgacctcggactgctcgagcaactctgccagccccgagcccgcc
gtccccgtcattcagagcactttcagcatgaagatggagcccaacgtgccgaccgtggtg
cccagcgaggcggtcaacggggaggacgaaatggacatttacgaggatttcgaggatgac
cccaaatcggactacagcagtgagaacgagacgcaacagtcggtcactgccaactga
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