Trichomycterus rosablanca: 134332116
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Entry
134332116 CDS
T09921
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134332116 (chd1)
03036 Chromosome and associated proteins [BR:
trn03036
]
134332116 (chd1)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
134332116 (chd1)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
134332116 (chd1)
SLIK complex
134332116 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
134332116
NCBI-ProteinID:
XP_062869655
LinkDB
All DBs
Position
18:21876690..21901538
Genome browser
AA seq
1800 aa
AA seq
DB search
MDGRSEDESVSNSSGESSNSDDESGSGSASGSSSSSSSSSSSQSGSSSGSGSDSGSQSDS
DSEKSKRKNVQNNASKIDSEFWKSNPSILAVQRSAMLRKQQLQQQQQHHHHHHQQQSSSN
SDSDEASSSSDDSGDDSSGKRKSKRSGSDSDSGSGSSSGSDSSDSSAEEETRHSEESVSD
YEPSHKVKSRKPPTKANARNGKKVSKKKPAESSSNDDDDYKKSLAGPRRQATVNISYKED
EELKTDSDDLVEVCGEDVPPPEEDEFETLEKVMGIRIGRKGATGATTTVYAVEADGDPNA
NFIPNKQPGDVQYLIKWKGWSHIHNTWETEETLKLQNVKGMKKLDNFKKKEQDKRKWLKA
ASPEDVEYFNCQQELLDDLHSQYQIVERVIAHSNQKSAAGFPDYLCKWQGLPYFECSWED
GALIGRKFQKCIDDYISRNQSKMIPFRDCKVLKQRPRFMPMKKQPHYIGAEGLELRDYQL
DSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLSYLFHEHQLYGPFLLVVPLSTLTSWQ
REIQLWAPQMNVVVYLGDISSRNMIRTHEWMHAHNKRLKCNILLTTYEILLKDKSFLGNV
SWAFIGVDEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFY
SWERFEDEHGTGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYY
KWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYSKVEALQHLIRS
SGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEMRKQA
LDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQ
VNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLNTGSAPSSSSTPFNKEEL
SAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPATVGEELLSQFKVANFS
MMEEEDMDANGNRKNWDDIIPEEQRRKLEEEERQKELAEIYMLPRMRNCAKQISFNGNEG
RRSRNRRYSVSDSDSASDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLER
LDAIARDAELVDKSEHDLRRLAETVHNGCIRTLKENPCGPEKTSGGRKGKVKGPTFRISG
VQVNAKLVISHEEELAPLHKAIPADPEERKRYMLPCHAKAAHFDIDWGKEDDSSLLVGIY
EYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQRQT
GTANSRKRKPRGKKNKTVKPKVEEVVNSLSSAPPSDKSSEDEDDEKEEEKESAPAKPPPN
RRGKASDLVVKKEEEEEEEDDDDEDEEEEEEKKPELESTVKYTEEETKEKEIKKEIKKEK
KEESRESKEKKEPKEKKEGKAVEHKVEDSPTEKVPEIKVEVREKNKKPDTPVHVTAGGEN
IPEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITDC
LKEYTNPELIKQWRRNLWIFVSKFTEFDARKLHKLYKHAIKKRQETAQTADQNTSTVNTQ
ALKQTDIERLKDIQQDESSRDSYSSDRHHSSSRSHEQNKERHPSDSYRKGSDSRKRPYSS
FSNGKDHRDHYRDRQDSRYYSDSKHRKLDDHRSSRDGWSDSNNKERLHSDHRSSSDYHKS
RDYRYHSDWQMEQRGSNSGPRSPRDQRSPYDSRSPMGRRSPFEYSEHKSTPEQVWSGRNT
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atggatggccgcagtgaagatgaaagtgtgagcaacagcagtggagagtccagtaactct
gatgatgagtctggatcgggttctgcatctggctccagctcaagcagcagcagctccagc
agcagtcagtcagggagcagctcaggaagtggctccgactcgggcagccagtccgattct
gactctgagaaatccaagagaaagaatgttcagaataatgcttccaagattgattctgaa
ttttggaagtctaacccaagtatcctggcagtgcagaggtcagccatgctcaggaaacag
cagctgcagcaacagcaacagcatcaccaccaccaccaccaacaacaaagctcttcaaac
agtgactcagatgaggcgtcctcaagcagtgatgactctggcgatgactcctcaggaaaa
cgaaaaagcaaaaggtctggatctgactcggattcaggttctgggtctagctcagggagt
gactcgtctgattcttcagccgaggaagagacgagacacagtgaagagtcggtttcagac
tatgagccctcccacaaagtcaaaagccggaagccgcctaccaaggcaaatgccagaaat
gggaaaaaggtttcaaaaaagaagccggcagaatcttcatctaatgatgacgatgactat
aaaaagtctctggctggtccacgaaggcaggccacagtcaacattagctacaaagaggat
gaagagttaaaaacagactcggacgatctggtggaggtttgtggagaggacgtaccacca
cctgaagaggatgagtttgagactctggaaaaagtgatgggcataagaataggacgaaaa
ggagccactggggccactaccacagtctatgctgtagaagccgacggagatcccaatgcc
aactttatcccgaacaagcagcctggagacgtgcagtacctgataaaatggaaaggctgg
tcacacattcataacacatgggagacagaggagaccctaaagctgcagaatgtgaagggc
atgaagaagctggacaattttaaaaagaaggagcaggacaagagaaagtggcttaaagca
gcttcacctgaggatgtggagtactttaactgccaacaggaactactggatgatctgcat
tcacagtatcagattgtagagagagttattgcgcattcaaatcagaagtcagcagctggc
ttcccagactacttatgcaaatggcaagggcttccatacttcgaatgcagctgggaagat
ggagcgcttattggtagaaagtttcaaaagtgcatcgatgattacattagccgaaaccag
tccaaaatgatccctttcagagactgcaaggttttaaagcagaggccacggtttatgccc
atgaagaaacagcctcattatattggtgcagaaggacttgagctacgggactatcagctg
gacagcttaaactggatggcccattcttggtgcaaggggaacagctgtattttagcagat
gaaatgggcctgggaaagactattcagaccatctcctttttaagctacctgtttcatgag
caccagctctatggacctttcctactggtggtgcctttgtccaccctcacctcctggcaa
agggaaattcagctctgggccccacagatgaacgtagtggtctatctgggtgacatcagc
agcaggaacatgattagaacacatgaatggatgcatgctcacaacaagcggctgaagtgt
aacattcttcttactacatatgaaattcttctcaaagacaagtcatttctagggaacgtc
agctgggcttttattggtgtggatgaggcccacagactgaaaaatgatgattcacttttg
tacaagaccatgattgatttcaagtccaaccaccggcttcttatcacaggaacaccccta
cagaattctcttaaggagctttggtctcttctccacttcatcatgccagaaaagttttac
tcatgggagcggtttgaggatgagcatggtacaggcagggattcaggctacaccagcttg
cacaaggagctggaacctttcctgttgcgcagggttaagaaggatgtggagaagtcactg
cctgccaaggttgagcagattctcagggtcgaaatgagtgccattcagaaacaatactac
aagtggatcttgacaaggaactacaaggcccttagtaaaggcacaaaagggagcacttct
ggtttcctcaacatcatgatggagctaaagaaatgctgtaatcattgctacctcatcaaa
ccgcccgatgacaacgaattctacagtaaagttgaggccttgcagcatctgatccggagt
agtgggaagcttgtccttctggataagctgctggtgcgactaaaggagcgtggacatcgt
gtgctgatcttttcccagatggttaggatgctggacatcttggctgagtatctgaagagt
cgccagtttttatttcagaggttggatggttccattaagggtgagatgaggaagcaggca
ctagatcatttcaatgcagaaggatcagaggatttctgttttctgttgtccacgcgagcg
ggtggcctgggtattaacttggcctctgcagataccgtagtcatatttgactctgactgg
aacccccaaaatgacctgcaggctcaggccagagcacataggattggacaaaagagacag
gtaaatatctatcgtctggtgaccaagggatctgtggaggaggatatcattgagagagct
aagaagaagatggtgctggaccaccttgtgattcagaggatggacactacaggaaagact
gtcctcaatactggttctgcaccatccagcagttccacccctttcaacaaagaggagctg
tctgcaattttaaagtttggtgctgaagaactcttcaaagagccagagggagaagagcaa
gagcctcaggaaatggatattgatgagattttaaaaagagcagagacgagagaaaatgac
cctggcccagctactgtaggagaagagcttctctctcagttcaaggtggcaaatttctcc
atgatggaggaggaggacatggatgcaaatggcaaccgaaaaaactgggacgatattatt
ccagaagagcaacgccgaaaactggaagaagaggagaggcaaaaagaactggcagaaatc
tacatgctgccccgcatgagaaattgtgccaaacagataagctttaacggtaacgagggc
agacgcagtcgcaacagaagatactccgtctctgacagcgactctgcctctgaccgaaaa
cggcccaagaaacgaggcagaccccggactattcctcgagagaatattaagggctttagt
gatgctgaaatacgaagatttatcaaaagctacaaaaaatttggtggtcctttggaaagg
ctggatgctattgcacgtgatgctgaactggttgataaatcggagcatgatctgaggcgg
cttgctgaaactgttcataatggttgtataagaaccctgaaggaaaacccatgtggacca
gagaaaacctcaggaggcagaaaaggaaaggtaaaaggaccgactttcaggatctcaggg
gttcaagtcaatgctaagttagtaatctcacatgaggaggaactggcaccattgcacaaa
gcaattcctgctgacccagaggagagaaagaggtatatgcttccttgccatgcaaaggca
gctcattttgacattgactggggaaaagaggatgactccagcctgcttgttggaatttat
gagtatggctatggaagctgggaaatgattaaaatggaccctgatcttaatctgacccat
aagcttttaccagacgatcctgataaaaagccacaggcaaagcagctccagactcgagct
gactacctcattaaattactaagcaaggaccttgccaagaaggaggcccagaggcagact
ggcacagcaaattcaagaaagaggaagccacgtggaaagaagaacaaaactgtaaaacca
aaagtagaggaagtggtcaacagtctttcctctgctcctccatctgataagagttctgaa
gatgaagatgatgaaaaggaagaggaaaaggaatcagcacctgccaagccaccaccaaac
agaaggggaaaagcctctgatctagtggtaaaaaaggaggaggaggaggaggaggaagat
gatgatgatgaagacgaagaggaggaggaagagaagaaaccggagctagaatccacagtc
aaatacacagaggaggagacaaaagaaaaagagattaagaaagagatcaaaaaggaaaag
aaagaagaaagtcgagagagcaaagagaaaaaggaacccaaagagaaaaaagagggcaaa
gctgtggagcacaaagtagaagattctcccacagaaaaggttccagaaattaaagttgaa
gttcgggaaaagaacaaaaagcctgacactccagtccatgttactgctggtggagaaaac
attccggaggaatcggaggagcttgatcagaagaccttcagtgtgtgtaaggagcgcatg
cgacctgtgaaggcagccttgaaacagctggatcgtcctgagaaaggtctttcagagcgt
gaacagctggagcacactcgccagtgcctgatcaaaatcggagaccatatcacagactgt
ctaaaagagtacactaaccccgaactgatcaaacagtggagaagaaatctttggatattt
gtttccaagtttacagagtttgatgccagaaaattgcacaaactgtataagcatgcaatc
aaaaaaagacaagagaccgctcagacagcggaccaaaacactagcactgtaaatacacaa
gccctcaaacaaacagacatagaaagattaaaggacatacaacaggatgaaagcagtaga
gacagttacagttcagaccgacaccattcaagctctcgcagccatgagcaaaacaaggag
cgccaccctagtgactcctacagaaaaggctcagactccagaaagagaccttactcctca
tttagcaatggcaaagaccacagagaccactacagagatcgccaggacagcagatactac
agcgacagcaagcataggaagctagatgatcaccggtccagtcgagacggttggtcagac
agcaacaataaggaacgtcttcactcggatcaccgctccagctcggactaccacaaatct
cgggactatcgctaccactcagactggcaaatggagcaaagaggttcaaacagtggacca
cgttcccctcgagaccaacggtcgccttatgactcgcgttctcccatgggccgccgctca
cccttcgagtactctgagcacaagagcacacccgagcaagtctggagcggtcgcaacaca
tag
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integrated database retrieval system
