Trichomycterus rosablanca: 134332228
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Entry
134332228 CDS
T09921
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
134332228 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
trn01009
]
134332228 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
trn04515
]
134332228 (pcdh1a)
Protein phosphatases and associated proteins [BR:
trn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134332228 (pcdh1a)
Cell adhesion molecules [BR:
trn04515
]
Cadherins
Protocadherins
134332228 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
He_PIG
Motif
Other DBs
NCBI-GeneID:
134332228
NCBI-ProteinID:
XP_062869856
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All DBs
Position
18:9464690..9595148
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AA seq
1182 aa
AA seq
DB search
MDFAVGLYLLLAVLDYGSSSLGGILYRVREEQPPSTVIGSLAADQGLPDSGHLYKLEVGT
PYLRVDGKTGEIFTTETPIDRETLKDCRIKGKPCFLEFEVSVTDLIQNQSPRLIEGRIEV
LDINDNTPQFPSPVLTLSVQENTHMGATFSIPLATDKDTERNGVADYTLSAGPEAVSLFG
LQVADDRGEKLPQLIVMGNLDRELKDSYDLTIKVVDGGSPPRYSSALLRIVVTDANDNAP
KFEKSSYEAEVSENSPVGHSVLQVKANDSDLGPNGEIEYTIHQASDPVPKLLQIDRSTGI
IYVKGPLDREEINSLKFHVIARDKGPSPKSSSTYVSVDVTDQNDNAPAVEIRGIGLRTHS
DGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPAGDSFVDNKKKYFL
QTTTPLDYERVRDYRVEIVAVDSGNPALSSTNSLKVQVTDINDNSPIFSLPVFEVEFAEE
NQPGEKVIDVIALDADSGTNAELIYSIVADSSTRGLFEIDANTGEVRARSPLDREHKERY
EFRVTAADKGVPSHRGTATVVIKVLDRNDNDPKFMLSTYSFSVLENMPPLSPVGMVTVLD
MDKGENSQVQLSVEPNVGKFVVQNGTGTILSSISFDREKESSYTFRLKAVDGGDPPRSSY
VGVTINVLDENDNAPVVTKPSNSSFTRLSPLASPDSVVEVVEAEDMDSGANAELVYSIAG
GNPHELFYISPSDGKIKLTKELTRKHGGLHRLVVKVSDRGKPSRHATALVHIYVNETISN
VSLVEGLVGHSLYTPLDTDIAGDPDYGLAAQRSNIVYGSLAGMAGVVTVIIAVVFIRHHL
QRETKSGYQAGKKETKDLYAPKQGPKCIKSKKGRKGKPQKSPKPLGEDEEVSLQKSLKFN
IDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQAVQELPATNT
FVGTERDDNSTGSDQYSDYSYKTSQPKYSTKSLPHRRVTFSTANPVQDAQDSSQQSYYDS
GLEESETPSSKSSSGPRLGPLALPEEHYERTTPDGSIGEMEHPENDVRSLPDVAMTGTCS
PECSELGHSDACWMPGQPSPARKTRTLPKLSTFVPYQERGTLGRLANGEPRPRLPPSRSA
YVPNDHSPNDHVPVEEVPLSVTSEFPPTSSTSNHAPKREIYL
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgctgtgggattgtatctgcttttggcggtgttggactatgggagcagctca
ctgggtggcatcctctaccgtgttcgtgaagagcagcctccaagcacagtgattggcagc
ctggcggctgaccagggcttacctgactcgggacatctatacaagctggaggtgggcacc
ccttacttgagggtggatggaaaaacaggagaaatattcaccactgagacccccatagac
agagaaacgctgaaggattgtcgaataaaaggaaagccctgctttctggagttcgaggtg
tcagtcacagacctaatccagaaccaaagtccacgactgattgagggacggatcgaggtg
ctggacattaatgataacaccccacagttcccctcacctgtgcttactctttctgttcag
gagaacactcacatgggagccaccttttccatcccactggccactgacaaagacacagag
cgtaatggagtagctgattatactctctctgctggaccagaggctgtttcactttttggc
ctgcaagtggcagatgacaggggtgagaaattgcctcagctcattgtgatgggaaacctg
gacagagagttgaaggattcctacgaccttactattaaagtagtggacgggggaagccca
ccacgctacagtagtgccttgctgagaattgtcgtcacggatgccaatgacaatgctccc
aagtttgagaaatcctcctatgaagcggaagtttcagagaacagcccagttggacactca
gtattgcaggtcaaagctaatgactcagatctgggtccaaatggtgagattgaatacact
atacaccaggccagtgatccagtcccaaagttacttcagattgaccgttccactggcatc
atatacgtcaaaggcccattggatcgtgaagagataaacagtctaaaattccatgtaatt
gcccgggacaaaggtccttcacctaaaagttcctctacttacgtttctgttgatgtaact
gaccagaatgacaatgcaccagctgtggagatccgtggtattggtcttaggactcatagc
gacggagtggcaaacatctctgaagatatgccagtgggcacagccgtggcgctggtgcaa
gtttcagataaggatgaaggagaaaatgcagtggtgacttgtgtggtagctggggatgtt
ccattccagctccgaccagctggtgattcctttgtggataacaaaaagaagtacttttta
caaaccaccacacctctagactatgaacgagtcagggactatcgggtagaaattgtcgct
gtggactcaggcaacccagctttgtccagcaccaactctttgaaagtccaagtcactgac
attaatgacaattctcccatattctcactgcctgtgtttgaagtagagtttgctgaagaa
aaccagccaggagaaaaggttattgatgttattgctttagatgcagacagtggaaccaat
gcagaactcatttacagcattgttgcagactcctcaacaaggggactttttgagattgac
gcaaacacaggagaagtaagagcaagaagcccacttgaccgtgagcacaaggaacgttat
gagtttcgtgtcactgcagcagacaagggtgttcctagccacagaggaacagcaacagtt
gttataaaggtgctggatcgaaacgacaatgaccccaagttcatgcttagtacctacagc
ttctcagtactggagaacatgccaccacttagccctgttggcatggtgactgtattagat
atggataaaggtgaaaattctcaagtccagctctctgtggaaccaaatgttggaaaattt
gtagttcagaatggcacaggaactatcttgtccagtatatcctttgaccgggagaaagaa
agtagctacactttccgacttaaagcagtggatggaggggacccgcctaggtcatcttat
gttggtgtgaccatcaatgttctcgacgagaatgacaatgcacctgtagtaacaaagcct
tccaattcatctttcacacgtctgtcccccctggcatcacctgacagtgttgttgaggtg
gtagaggctgaggatatggactctggtgccaatgctgaactggtctatagtatagctggt
ggaaaccctcatgagctcttctacatctctccatctgatggaaagatcaaactaaccaag
gagctgactcgaaaacatgggggactgcatcgattagttgtgaaagtgagcgatagaggc
aaaccttcccgccatgcaactgccttggtgcacatttatgttaatgagaccatttcaaac
gtcagcctagtggagggtctagtgggacatagtttatacactccactagacacggacatt
gcaggtgaccctgactatggtctagctgctcaaagaagcaacattgtgtatggtagttta
gctggcatggcaggggttgttacagtaattatagcagtagttttcatcagacatcaccta
cagagggaaaccaaaagtggctatcaagctgggaaaaaagagaccaaagatctgtatgct
cccaaacaagggccaaagtgcattaagagcaaaaaggggagaaaaggaaagcctcaaaag
tcacctaaacctcttggagaagatgaagaggttagtcttcaaaagagtctaaaatttaac
attgacggggttaatgatagccccaggatccacctgcctttgacctacccacctggcagc
cctgacttgggcaggcattatcgctcaaattcacccctgccttccattcaacttcaggcc
cagtctccatctgcttcccagaagcatcaagcagtccaggagcttcctgccaccaataca
ttcgtgggaacagaaagagatgacaactctactggatctgaccaatactcggattacagc
tacaaaaccagtcagccaaaatacagcacaaaatcgctgcctcatcgcagagtgacgttc
tccacagccaatccggtccaggatgcccaggattcatctcagcagagctactatgatagt
ggccttgaggagtcggagacacccagcagcaagagctcttcgggaccccgtcttggccca
ctggccctgcccgaggaacactacgagaggaccaccccggacggcagcattggagagatg
gagcaccctgagaatgacgttcgctcgctgccagacgttgccatgacgggaacctgcagt
ccggagtgtagcgagctcggccactcggatgcctgctggatgcccggacagccttcgcct
gctcgcaagacacgcaccctgcccaaactctccaccttcgtgccttaccaggagagaggg
accctgggacggcttgcgaacggcgagccccggccccgccttccgccttcccgcagtgcc
tacgtccccaacgaccactcccctaacgaccatgtcccggtggaggaggttcctttgagc
gtcacatccgagttcccacccaccagctccacctccaatcacgcccctaaacgcgagata
tacctgtga
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