KEGG   Trichomycterus rosablanca: 134332320
Entry
134332320         CDS       T09921                                 
Symbol
rfc3
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
trn  Trichomycterus rosablanca
Pathway
trn03030  DNA replication
trn03410  Base excision repair
trn03420  Nucleotide excision repair
trn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:trn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    134332320 (rfc3)
   03410 Base excision repair
    134332320 (rfc3)
   03420 Nucleotide excision repair
    134332320 (rfc3)
   03430 Mismatch repair
    134332320 (rfc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:trn03032]
    134332320 (rfc3)
   03036 Chromosome and associated proteins [BR:trn03036]
    134332320 (rfc3)
   03400 DNA repair and recombination proteins [BR:trn03400]
    134332320 (rfc3)
DNA replication proteins [BR:trn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    134332320 (rfc3)
  DNA Replication Termination Factors
   ELG1-RFC complex
    134332320 (rfc3)
Chromosome and associated proteins [BR:trn03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    134332320 (rfc3)
DNA repair and recombination proteins [BR:trn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     134332320 (rfc3)
  Check point factors
   HRAD17(Rad24)-RFC complex
    134332320 (rfc3)
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA_lid_RFC1 AAA AAA_22 AAA_16 nSTAND6 AAA_11 Sigma54_activ_2 ABC_tran AAA_2
Other DBs
NCBI-GeneID: 134332320
NCBI-ProteinID: XP_062869982
LinkDB
Position
18:complement(27947754..27955912)
AA seq 356 aa
MSLWVDKYRPTSLAKLDYHKEQANQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY
GSGVEKLRIEHQSITAPSKKKIEINTIASNYHLEVNPSDAGTSDRVVIQELIKTMAQSQQ
IQSSTQREFKVVLLTEVDRLTKDAQHALRRTMEKYMTTCRLILCCNSTSKVISPIRSRCL
AVRVPLPSSEEVCSVLMGVCKKEGLLLPAELAKRIAEKSGRNLRKALLMCEACRVQQYPF
SPDQEIPQTDWEVFLRETANAIVNEQSPQRLLEVRARLYELLTHCIPAEIIMKGLVSELL
SNCDGHLKPEVAQLAAYYEHRLQLGNKAIYHLEAFVAKFMAIYKKFMEDGLDNFMF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgagtttatgggtggataaatacagaccaacatctctggcgaagctggattatcataaa
gaacaagcaaaccagctgagaaatttggtacaatgtggcgacttccctcaccttcttgtt
tacggaccgtccggcgctggaaagaagacccggatcatgtgtctgctccgggagttgtac
ggttcaggggtggagaagctccgcatcgaacaccagtccatcactgcaccttcgaaaaag
aaaatcgaaatcaacacgatcgccagtaactatcatttggaggtcaatccgagtgacgcg
gggaccagcgaccgcgtcgttatccaggagctgatcaagacgatggcgcagtcccagcag
attcagtccagcacacagagagagttcaaggtggtgctgctgaccgaagtggaccggctg
accaaggacgcgcagcacgccctacgccgaaccatggagaagtacatgactacctgtcgt
ctcatcctgtgctgtaactccacctccaaggtcatctcgcccatcaggagcaggtgcctg
gctgtcagggtgccgctgcccagctcggaggaggtgtgcagcgttctgatgggcgtgtgc
aaaaaggaaggtctgctgctcccggctgagctggccaaacggatcgcagagaagtcggga
cgcaacctgcgcaaagctctgctgatgtgcgaggcctgtcgagtccaacagtacccgttc
tctccagatcaggaaatcccccaaacggactgggaggtgttcctcagagagacggccaac
gccatcgtgaacgagcagagcccacaaagactcctggaggtccgagcgagactctacgag
ctcctgacccactgcattccagcagaaatcatcatgaagggcctggtgtccgagctgctg
agtaactgcgacggtcacctgaaacccgaggtggctcagctggccgcttactacgagcac
cgactgcagctgggcaacaaggcgatttaccacctggaggccttcgtggccaagttcatg
gccatctataagaagtttatggaggacggactggataacttcatgttctga

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